View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_29 (Length: 424)
Name: NF14484_low_29
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_29 |
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| [»] scaffold0035 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 5823631 - 5824034
Alignment:
| Q |
1 |
ttataactacttattctggtctttgtcgttacaaagttggtggtattcttcaagtaacaggattccataactccaatccacaattcaagtttgtaaggcg |
100 |
Q |
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| T |
5823631 |
ttataactacttattctggtctttgtcgttacaaagttggtgatattcttcaagtaacaggattccataactcaaatccacaattcaagtttgtaaggcg |
5823730 |
T |
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| Q |
101 |
aaagaatgtgttgttgagtattgatatggataaaacagacgaatcagagcttcaaaaagcaattgaaaatgcttctgagttgttgaaaaagttcaacaca |
200 |
Q |
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| T |
5823731 |
aaagaacgtgctgttgagtatcgattcggataaaacagacgaatcggagcttcaaaaagctattgaaaatgcgtctgcattgttaaaggagttcaaaaca |
5823830 |
T |
|
| Q |
201 |
agcattgttgagtataccagttttgcagataccaaatcaattcctggacattatgtgatttattgggaacttttgatgaagggttcatctcatcctccaa |
300 |
Q |
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| T |
5823831 |
agtgttgttgaatacactagttttgctgaaacaaaatcaattcctggacattatgttatttattgggagcttttgatgaaggattcctcttgtcctccaa |
5823930 |
T |
|
| Q |
301 |
caaatgaagtattgaatcaatgttgtttggttatggaagagtgtttgaattctgtttatagacaaggaagagttgctgataattcaattgggccattaga |
400 |
Q |
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| T |
5823931 |
ctgatgaagtgttgaatcaatgttgtttggttatggaagagtctttgaattctgtttatagacaaggaagagttgctgataattcaattgggccattaga |
5824030 |
T |
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| Q |
401 |
gatt |
404 |
Q |
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| T |
5824031 |
gatt |
5824034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 404
Target Start/End: Complemental strand, 5832400 - 5832005
Alignment:
| Q |
9 |
acttattctggtctttgtcgttacaaagttggtggtattcttcaagtaacaggattccataactccaatccacaattcaagtttgtaaggcgaaagaatg |
108 |
Q |
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| T |
5832400 |
acttattccggtttttgccgttacagagttggtgatattcttcaagtcaatggattccataattctgatcctcagttcaaattcgtgaggcgaaagaacg |
5832301 |
T |
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| Q |
109 |
tgttgttgagtattgatatggataaaacagacgaatcagagcttcaaaaagcaattgaaaatgcttctgagttgttgaaaaagttcaacacaagcattgt |
208 |
Q |
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| T |
5832300 |
tgttgttgagtatcgattcggataaaacagacgaatcggagcttcaaaaagctattgaaaatgcgtctgcattgttaaaggagttcaaaacaagtgttgt |
5832201 |
T |
|
| Q |
209 |
tgagtataccagttttgcagataccaaatcaattcctggacattatgtgatttattgggaacttttgatgaagggttcatctcatcctccaacaaatgaa |
308 |
Q |
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| T |
5832200 |
tgaatacactagttttgctgaaacaaaatcaattcctggacattatgttatttattgggagcttttgatgaaggattcctcttgtcctccaactgatgaa |
5832101 |
T |
|
| Q |
309 |
gtattgaatcaatgttgtttggttatggaagagtgtttgaattctgtttatagacaaggaagagttgctgataattcaattgggccattagagatt |
404 |
Q |
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| T |
5832100 |
gtgttgaatcaatgttgtttggttatggaagagtctttgaattctgtttatagacaaggaagagttgctgataattcaattgggccattagagatt |
5832005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 78475 - 78557
Alignment:
| Q |
78 |
ccacaattcaagtttgtaaggcgaaagaatgtgttgttgagtattgatatggataaaacagacgaatcagagcttcaaaaagc |
160 |
Q |
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| T |
78475 |
ccacaattccattttgtgcgtcgaaagaatgtgttgcttagtattgattcggataaaacagatgagtcagagctacaaaaagc |
78557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 403
Target Start/End: Original strand, 78736 - 78794
Alignment:
| Q |
345 |
ttgaattctgtttatagacaaggaagagttgctgataattcaattgggccattagagat |
403 |
Q |
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| T |
78736 |
ttgaattctgtttataggcaatgtagggttgctgatcattcaattggaccattggagat |
78794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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