View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_low_31 (Length: 403)

Name: NF14484_low_31
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_low_31
NF14484_low_31
[»] chr3 (13 HSPs)
chr3 (1-333)||(21728165-21728496)
chr3 (220-321)||(47430928-47431029)
chr3 (220-333)||(50879952-50880064)
chr3 (244-301)||(28776737-28776794)
chr3 (160-223)||(50880229-50880292)
chr3 (246-296)||(37610538-37610588)
chr3 (267-323)||(55210048-55210104)
chr3 (248-286)||(31638488-31638526)
chr3 (268-321)||(11348271-11348324)
chr3 (155-219)||(11348182-11348246)
chr3 (248-306)||(39133402-39133460)
chr3 (246-287)||(27234206-27234247)
chr3 (260-312)||(24753266-24753318)
[»] chr4 (6 HSPs)
chr4 (220-333)||(18091845-18091959)
chr4 (244-301)||(38032188-38032245)
chr4 (244-296)||(34095431-34095483)
chr4 (262-333)||(10803154-10803225)
chr4 (247-291)||(2293201-2293245)
chr4 (253-313)||(43894490-43894550)
[»] chr1 (5 HSPs)
chr1 (220-333)||(52759628-52759742)
chr1 (244-301)||(7111247-7111304)
chr1 (246-306)||(17244471-17244531)
chr1 (250-301)||(51468673-51468724)
chr1 (246-291)||(51218647-51218692)
[»] chr8 (3 HSPs)
chr8 (220-294)||(9244360-9244434)
chr8 (248-301)||(39325519-39325572)
chr8 (246-286)||(44102970-44103010)
[»] chr7 (8 HSPs)
chr7 (220-294)||(29186959-29187033)
chr7 (220-333)||(43114826-43114940)
chr7 (220-312)||(9392545-9392637)
chr7 (220-320)||(12630833-12630939)
chr7 (246-306)||(37236080-37236140)
chr7 (247-312)||(13599036-13599101)
chr7 (250-312)||(35314930-35314992)
chr7 (155-204)||(18852095-18852144)
[»] chr5 (2 HSPs)
chr5 (220-333)||(13277979-13278091)
chr5 (244-301)||(19229841-19229898)
[»] scaffold0084 (1 HSPs)
scaffold0084 (248-313)||(12870-12935)
[»] chr6 (2 HSPs)
chr6 (244-294)||(11801114-11801164)
chr6 (258-301)||(32348101-32348144)
[»] chr2 (1 HSPs)
chr2 (246-309)||(14715036-14715099)
[»] scaffold0046 (1 HSPs)
scaffold0046 (248-313)||(23812-23877)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 21728496 - 21728165
Alignment:
Q  1 taaggaatagattcgtggcttaatgatttaaataactccatcaaaatttcgaatttcatttgcgcttcaacaagtaatgggaatcaaaattagcggggat 100  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||  | |||||||||||||||| |   ||| |    
T  21728496 taaggaatagattcatggcttaatgatttagataactccatcaaaatttcgaatttcatttgctcttgaatgaataatgggaatcaaaatcaataggggt 21728397  T
Q  101 tttatgctaacaaaatacaacatattcatcagaaaattataaaattctcaaacgagagtagatgctgccatggttgttgaagttaagaagttcttggtac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21728396 tttatgctaacaaaatacaacatattcatcagaaaattataaaattctcaaacgagagtagatgctgccatggttgttgaagttaagaagttcttgctac 21728297  T
Q  201 tgtttaattgaaatgtttgtttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaa 300  Q
    ||| |   ||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21728296 tgtgtttgtgaaatgcttgtttgggatgattatgatggagtgattgcagggtgttgatgatgatagatgaagatgataatgatggtggtgtagtgactaa 21728197  T
Q  301 acagtatgtttatcttttttccttgggttttat 333  Q
    | |||| ||||||||||||||| ||||||||||    
T  21728196 atagtaggtttatcttttttcc-tgggttttat 21728165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 220 - 321
Target Start/End: Original strand, 47430928 - 47431029
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgtttatcttttt 319  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| |||||  |||||    
T  47430928 tttgggatggttatggtggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgatgaaatagtaggtttaaattttt 47431027  T
Q  320 tc 321  Q
    ||    
T  47431028 tc 47431029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 220 - 333
Target Start/End: Complemental strand, 50880064 - 50879952
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgtttatcttttt 319  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||| |||| |||||| |||||    
T  50880064 tttgggatggttatggtggagtgagtggagggtgttcatgatgatagatgaagatgacaatgatattggtgtagtgattaaatagtaggtttat-ttttt 50879966  T
Q  320 tccttgggttttat 333  Q
    ||||||||||||||    
T  50879965 tccttgggttttat 50879952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 28776794 - 28776737
Alignment:
Q  244 ttggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaa 301  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28776794 ttggagtgtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgattaaa 28776737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 50880292 - 50880229
Alignment:
Q  160 agatgctgccatggttgttgaagttaagaagttcttggtactgtttaattgaaatgtttgtttg 223  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||   ||||||| |||||||    
T  50880292 agatgctgccatggttgttgaagttaagaagttattgctactgtttttgtgaaatgcttgtttg 50880229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 37610538 - 37610588
Alignment:
Q  246 ggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtga 296  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  37610538 ggagggtgttgatgatgatagatgaagatgactatgatggtattgtagtga 37610588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 55210104 - 55210048
Alignment:
Q  267 atgaagatgacaatgatggtggtgtagtgactaaacagtatgtttatcttttttcct 323  Q
    ||||||||||||| |||||||||||||||| |||| |||| |||||| |||||||||    
T  55210104 atgaagatgacaaagatggtggtgtagtgattaaatagtaggtttattttttttcct 55210048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 31638526 - 31638488
Alignment:
Q  248 agggtgttgatgatgatagatgaagatgacaatgatggt 286  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  31638526 agggtgttgatgatgatagatgaagaagacaatgatggt 31638488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 11348271 - 11348324
Alignment:
Q  268 tgaagatgacaatgatggtggtgtagtgactaaacagtatgtttatcttttttc 321  Q
    |||||| |||||||||||||||||||||| |||| |||| |||||| |||||||    
T  11348271 tgaagaagacaatgatggtggtgtagtgattaaatagtaggtttattttttttc 11348324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 11348182 - 11348246
Alignment:
Q  155 agagtagatgctgccatggttgttgaagttaagaagttcttggtactgtttaattgaaatgtttg 219  Q
    |||| |||||||||||||||||||||||||||| |||| ||| ||||| ||   |||||||||||    
T  11348182 agagaagatgctgccatggttgttgaagttaaggagttattgctactgcttttgtgaaatgtttg 11348246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 39133460 - 39133402
Alignment:
Q  248 agggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagta 306  Q
    ||||||||||  |||||||||||||||||| |||||||| |||| |||| |||| ||||    
T  39133460 agggtgttgaaaatgatagatgaagatgacgatgatggttgtgtggtgattaaatagta 39133402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 27234206 - 27234247
Alignment:
Q  246 ggagggtgttgatgatgatagatgaagatgacaatgatggtg 287  Q
    ||||||||||||||||||| |||||||||||| ||| |||||    
T  27234206 ggagggtgttgatgatgatggatgaagatgaccatggtggtg 27234247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 24753266 - 24753318
Alignment:
Q  260 atgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgttta 312  Q
    |||||||||||||||||||||||| || |||| |||| |||| |||| |||||    
T  24753266 atgatagatgaagatgacaatgatagttgtgtggtgattaaagagtaggttta 24753318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 333
Target Start/End: Complemental strand, 18091959 - 18091845
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgttt-atctttt 318  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||| |  ||||    
T  18091959 tttgggatggttatggtggagtgattggagggtgttgatgatgatagatgaagatgtcaatgatggtggtgtagtgattaaatagtaggtttaaaatttt 18091860  T
Q  319 ttccttgggttttat 333  Q
    |||| ||||||||||    
T  18091859 ttccctgggttttat 18091845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 38032188 - 38032245
Alignment:
Q  244 ttggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaa 301  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  38032188 ttggagtgtgttgatgatgataaatgaagatgacaatgatggtggtgtagtgattaaa 38032245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 34095431 - 34095483
Alignment:
Q  244 ttggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtga 296  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  34095431 ttggagggtggtgatgatgatagatgaagatgacaatgatagtggtgtagtga 34095483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 10803225 - 10803154
Alignment:
Q  262 gatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgtttatcttttttccttgggttttat 333  Q
    |||||||||||||||||||||||||| |||||||| ||||||||| | |||  |||||| | ||||||||||    
T  10803225 gatagatgaagatgacaatgatggtgatgtagtgattaaacagtaggattaattttttttcctgggttttat 10803154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 2293201 - 2293245
Alignment:
Q  247 gagggtgttgatgatgatagatgaagatgacaatgatggtggtgt 291  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||    
T  2293201 gagggtgtttatgatgatagatgaagatgacaatgatggttgtgt 2293245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 43894550 - 43894490
Alignment:
Q  253 gttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgtttat 313  Q
    |||||| | ||||||||||||||||||||||| | ||||||||| |||| | |||||||||    
T  43894550 gttgataacgatagatgaagatgacaatgatgattgtgtagtgattaaagaatatgtttat 43894490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 333
Target Start/End: Complemental strand, 52759742 - 52759628
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgttt-atctttt 318  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||| |  ||||    
T  52759742 tttgggatggttatggtggagtgattggagggtgttgatgatgatagatgaagatgtcaatgatggtggtgtagtgattaaatagtaggtttaaaatttt 52759643  T
Q  319 ttccttgggttttat 333  Q
    |||| ||||||||||    
T  52759642 ttccctgggttttat 52759628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 7111247 - 7111304
Alignment:
Q  244 ttggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaa 301  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7111247 ttggagtgtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgattaaa 7111304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 17244531 - 17244471
Alignment:
Q  246 ggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagta 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  17244531 ggagggtgttgatgatgatagatgaagatgacaatgatggtgatgtagtgattaaatagta 17244471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 51468673 - 51468724
Alignment:
Q  250 ggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaa 301  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  51468673 ggtgttgatgatgatagatgaagatgacaatgatgatggtgtagtgattaaa 51468724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 51218647 - 51218692
Alignment:
Q  246 ggagggtgttgatgatgatagatgaagatgacaatgatggtggtgt 291  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||    
T  51218647 ggagggtgttgatgctgatagatgaagatgacaatgatggttgtgt 51218692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 9244434 - 9244360
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9244434 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgaaaatgatggtggtgtagt 9244360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 39325519 - 39325572
Alignment:
Q  248 agggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaa 301  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||    
T  39325519 agggtgttgatgatgatagatgaagatgacaatgatggttgtgtggtgattaaa 39325572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 44102970 - 44103010
Alignment:
Q  246 ggagggtgttgatgatgatagatgaagatgacaatgatggt 286  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44102970 ggagggtgttgatgatgatagatgaagatgacaatgatggt 44103010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 29187033 - 29186959
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29187033 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgaaaatgatggtggtgtagt 29186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 43114826 - 43114940
Alignment:
Q  220 tttgggatggttatgatgg-agtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgtttatctttt 318  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||| |||| |||||  ||||    
T  43114826 tttgggatggttatggtgggagtgattggagggtgttgatgatgatagataaagatgataatgatggtggtgtagtgattaaatagtaggtttaattttt 43114925  T
Q  319 ttccttgggttttat 333  Q
    || | ||||||||||    
T  43114926 tttcctgggttttat 43114940  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 9392545 - 9392637
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgttta 312  Q
    |||||||| |||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||    
T  9392545 tttgggatcgttatggtgaggtgattggagggtgttgatgatgatagatgaagatgacaatgatgatggtgtagtgattaaatagtaggttta 9392637  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 320
Target Start/End: Complemental strand, 12630939 - 12630833
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatg------acaatgatggtggtgtagtgactaaacagtatgtttat 313  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||      ||||||||| ||||||||||| |||| |||| ||||||    
T  12630939 tttgggatggttatggtggagtgattggagggtgttgatgatgatagatgtagatgtagttaacaatgatgatggtgtagtgattaaatagtaggtttat 12630840  T
Q  314 ctttttt 320  Q
     ||||||    
T  12630839 ttttttt 12630833  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 37236140 - 37236080
Alignment:
Q  246 ggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagta 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  37236140 ggagggtgttgatgatgatagatgaagatgacaatgatggtgatgtagtgattaaatagta 37236080  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 13599036 - 13599101
Alignment:
Q  247 gagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgttta 312  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||| |||||    
T  13599036 gagggtgttgatgatgatagatgaagttgacaatgatggtggtgtagtaattaaatagtaggttta 13599101  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 312
Target Start/End: Original strand, 35314930 - 35314992
Alignment:
Q  250 ggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgttta 312  Q
    |||||||||||| |||||||||||||||||||||||| |||| |||| |||| |||| |||||    
T  35314930 ggtgttgatgattatagatgaagatgacaatgatggttgtgtggtgattaaatagtaggttta 35314992  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 18852095 - 18852144
Alignment:
Q  155 agagtagatgctgccatggttgttgaagttaagaagttcttggtactgtt 204  Q
    |||| |||||||||||||||||||||||||||| |||  ||| |||||||    
T  18852095 agagaagatgctgccatggttgttgaagttaaggagtgattgctactgtt 18852144  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 13277979 - 13278091
Alignment:
Q  220 tttgggatggttatgatggagtgattggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgtttatcttttt 319  Q
    |||| |||||||||| |||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||| | |||| |||| |||||  |||||    
T  13277979 tttgagatggttatggtggagtgattagagggtgttgctcatgatagataaagatgacaatgatggtggtgtagttattaaatagtaggtttaatttttt 13278078  T
Q  320 tccttgggttttat 333  Q
    | | ||||||||||    
T  13278079 ttc-tgggttttat 13278091  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 19229841 - 19229898
Alignment:
Q  244 ttggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaa 301  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  19229841 ttggagtgtgttgatgatgataaatgaagatgacaatgatggtggtgtagtgattaaa 19229898  T

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Target: scaffold0084 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 12870 - 12935
Alignment:
Q  248 agggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgtttat 313  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| | |||||||||    
T  12870 agggtgttgataatgatagatgaagatgacaatgatggttgtgtagtgattaaagaatatgtttat 12935  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 11801114 - 11801164
Alignment:
Q  244 ttggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagt 294  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  11801114 ttggagtgtgttgatgattatagatgaagatgacaatgatggtggtgtagt 11801164  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 301
Target Start/End: Complemental strand, 32348144 - 32348101
Alignment:
Q  258 tgatgatagatgaagatgacaatgatggtggtgtagtgactaaa 301  Q
    |||||||| |||||||||||||||||||||||||||||| ||||    
T  32348144 tgatgataaatgaagatgacaatgatggtggtgtagtgattaaa 32348101  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 14715099 - 14715036
Alignment:
Q  246 ggagggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgt 309  Q
    ||||||||||||||||||||||| ||||||||||||||||| || | |||| |||| |||||||    
T  14715099 ggagggtgttgatgatgatagataaagatgacaatgatggttgtctggtgattaaagagtatgt 14715036  T

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Target: scaffold0046 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 23877 - 23812
Alignment:
Q  248 agggtgttgatgatgatagatgaagatgacaatgatggtggtgtagtgactaaacagtatgtttat 313  Q
    |||| |||||| ||||||||||||||||||||| ||| | || |||||| |||| | |||||||||    
T  23877 agggagttgataatgatagatgaagatgacaattatgattgtatagtgattaaagaatatgtttat 23812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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