View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_low_39 (Length: 360)
Name: NF14484_low_39
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 78 - 343
Target Start/End: Original strand, 28743778 - 28744044
Alignment:
| Q |
78 |
tttagcaaagaaattatccccattttcaaggacatattagccatgaatcaaaaatttcttccttcagcctccatttt-catcattaattgaaatgataac |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
28743778 |
tttagcaaagaaattatccccattttcaaggacatattagccatgaatcaaaaatttcttccttcagcctccatttttcatcattaattgaaatgatatc |
28743877 |
T |
|
| Q |
177 |
cccttttattgcaaagtgggcatacattctttacagctaggagccagtctttgatgcaactcatgtggaatctatgtgcacagtccagtctttcaatttc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28743878 |
cccttttattgcaaagtgggcatacattctttacagctaggagccagtctttgatgcaactcatgtggaatctatgtgcacagtccagtctttcaatttc |
28743977 |
T |
|
| Q |
277 |
ttcaccagcatcaaaattttcctggtattacatcaaatttgttagaaaatacatgcatagtctttcg |
343 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28743978 |
ttcaccagcatcaaaattttcctgatattacatcaaatttgttagaaaatacatgcatagtctttcg |
28744044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 28743729 - 28743781
Alignment:
| Q |
10 |
aagaaaatacttcccatcattccgtctaaatgacaattaatacatttattttta |
63 |
Q |
| |
|
||||||| |||||||||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
28743729 |
aagaaaagacttcccatcattccgtccaattga-aattaatacatttattttta |
28743781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University