View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_4 (Length: 678)
Name: NF14484_low_4
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 33 - 678
Target Start/End: Original strand, 29602282 - 29602931
Alignment:
| Q |
33 |
tgcttgggatataagctttcacacaaaattaaacaacaatattatatatttgtatagt---tacccacttttatgttaatttttctctaaccttgggcan |
129 |
Q |
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| T |
29602282 |
tgcttggtacataatctttaacacaaaattagacatcaatattatatatttgtatagtaattaccaacttttatgttactttttctctaaccttgggcat |
29602381 |
T |
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| Q |
130 |
nnnnnnctcgctttaggttcaacattactcattcatatagtgttgcttttcgtaaatgacacagttgatgcaacaatggttgaacacttaacnnnnnnnn |
229 |
Q |
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| T |
29602382 |
ttttttctctctttaggttcaacatgactcattcatatagtgttgattttcgtaaatgacacagttgatgcaacaatggttgatcacttaacaaaaaaac |
29602481 |
T |
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| Q |
230 |
ntcaacctcaatcctatgtttagaccttacacgaaacactggattagaagcaacaacctttgcacttagcttctcacacaacaaaatttgcatggtttat |
329 |
Q |
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| T |
29602482 |
atcaacctcaatcatatgtttagaccttacacgaaacactggattggaagcaacaacctttgcacttagattctcacacaacaaaatttgcatggtttat |
29602581 |
T |
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| Q |
330 |
tattaatgggttgatatatcagctgtattatttagacgaataaaaactaacatcatattccgacactatatacgaatgagtgtggacatcaaatctgagg |
429 |
Q |
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| T |
29602582 |
tattaatgggttgatatatcagctgtattatttagacgaataaaaactaacatcatattccgacactatatacgaatgagtgtggacatcaaatatgagg |
29602681 |
T |
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| Q |
430 |
nnnnnnn-tatcctataagagagaacaaatcatagaaaatttagaaaccgtataaaaagacagggttgatgtcagattttgtgtcaaaaaacatttgatg |
528 |
Q |
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| T |
29602682 |
aaaaaaaatatcctataagagagaacaaattatagaaaatttaaaaaccgtataaaaatacagggttgatgtcagattttgtgtcaaaaaacatttgatg |
29602781 |
T |
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| Q |
529 |
attttcattaaaagcattgcctaaacctcgtgcttgtttctaattactgtttagatttgatgatttcaaccataatattaccactcaatttcattgtaag |
628 |
Q |
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| T |
29602782 |
attttcattacaagcattgcctaaagctcgtgcttgtttctaattactgtttagatttgatgatttcaaccataatattaccactcaatttcattgtaag |
29602881 |
T |
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| Q |
629 |
ccacaggaaagtaatttactaattgaaaacaaaggctaagatgtgtcttt |
678 |
Q |
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| T |
29602882 |
ccacaggaaagtaatttattaattgaaaacaaaggctaagatgtgtcttt |
29602931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 32273248 - 32273170
Alignment:
| Q |
48 |
ctttcacacaaaattaaacaacaatattatatatttgtatagttacccacttttatgttaatttttctctaaccttggg |
126 |
Q |
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|||| |||||||||| ||| |||||||| |||||||| ||||| || |||||||||||| ||||| |||||||||||| |
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| T |
32273248 |
ctttaacacaaaattcgacatcaatattacatatttgtttagtttccaacttttatgttactttttatctaaccttggg |
32273170 |
T |
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