View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_low_41 (Length: 352)

Name: NF14484_low_41
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_low_41
NF14484_low_41
[»] chr8 (2 HSPs)
chr8 (10-352)||(37928241-37928583)
chr8 (63-158)||(13784210-13784305)
[»] chr3 (6 HSPs)
chr3 (69-156)||(7834068-7834155)
chr3 (59-148)||(19561457-19561546)
chr3 (104-156)||(39714828-39714880)
chr3 (104-156)||(39943774-39943826)
chr3 (102-148)||(25252918-25252964)
chr3 (105-158)||(2868834-2868887)
[»] chr7 (6 HSPs)
chr7 (107-156)||(39429503-39429552)
chr7 (103-156)||(18250688-18250741)
chr7 (103-156)||(17026040-17026093)
chr7 (103-156)||(20259972-20260025)
chr7 (103-151)||(31490742-31490790)
chr7 (104-156)||(43052328-43052380)
[»] chr4 (6 HSPs)
chr4 (60-137)||(54625836-54625913)
chr4 (103-156)||(51409156-51409209)
chr4 (104-149)||(52705639-52705684)
chr4 (104-156)||(44377651-44377703)
chr4 (104-156)||(49820424-49820476)
chr4 (104-148)||(50711491-50711535)
[»] chr6 (3 HSPs)
chr6 (103-148)||(13311393-13311438)
chr6 (104-172)||(6998622-6998690)
chr6 (73-137)||(8597464-8597528)
[»] scaffold0316 (1 HSPs)
scaffold0316 (104-156)||(18756-18808)
[»] chr1 (1 HSPs)
chr1 (102-156)||(21681664-21681718)
[»] scaffold0444 (1 HSPs)
scaffold0444 (104-156)||(1455-1507)
[»] chr5 (4 HSPs)
chr5 (104-156)||(18879666-18879718)
chr5 (104-148)||(28430595-28430639)
chr5 (104-156)||(31620007-31620059)
chr5 (104-156)||(32157427-32157479)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 37928583 - 37928241
Alignment:
Q  10 ataatacttcattcatttcaaatcaagtgtcatttaagatttttcgtcccaattagggttggaaatgaatcgagttgagtcaaactcgtttaaactcgac 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928583 ataatacttcattcatttcaaatcaagtatcatttaagatttttcgtcccaattagggttggaaatgaatcgagttgagtcaaactcgtttaaactcgac 37928484  T
Q  110 tcgataagaattggttcaactcaaaacttgattcgagtttgacacgattaaagttcacgaacaacttgaatcaaacaagtcaaactatatcaagtttagc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37928483 tcgataagaattggttcaactcaaaacttgattcgagtttgacacgattaaagttcacaaacaacttgaatcaaacaagtcaaactatatcaagtttagc 37928384  T
Q  210 aaatttagttaacgaacttattaaaattatgatggatttgcttaaatcatagataatatttcatgtaaataacaaaaccacctttgaatcccagcctgag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928383 aaatttagttaacgaacttattaaaattatgatggatttgcttaaatcatagataatatttcatgtaaataacaaaaccacctttgaatcccagcctgag 37928284  T
Q  310 tattaatgtcaagtgcatgtaaagaaaatagtgactgacctgg 352  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  37928283 tactaatgtcaagtgcatgtaaagaaaatagtgactgacctgg 37928241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 13784210 - 13784305
Alignment:
Q  63 tagggttggaaatgaatcgagttgagtcaaactcgtttaaactcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacgatt 158  Q
    ||||| ||||||||| |||||| ||||| |||  || | | ||||||||||||| |||||||||  |||||||||||| |||||||||| ||||||    
T  13784210 tagggctggaaatgattcgagtcgagtcgaacctgtctgagctcgactcgataaaaattggttcggctcaaaacttgactcgagtttgaaacgatt 13784305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 7834068 - 7834155
Alignment:
Q  69 tggaaatgaatcgagttgagtcaaactcgtttaaactcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    ||||||||| |||||| ||||| |||  || | |||||||||||||||||||||||||| |||||||||  |||||||||||| ||||    
T  7834068 tggaaatgagtcgagtcgagtcgaacctgtctgaactcgactcgataagaattggttcagctcaaaactcaattcgagtttgaaacga 7834155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 19561546 - 19561457
Alignment:
Q  59 caattagggttggaaatgaatcgagttgagtcaaactcgtttaaactcgactcgataagaattggttcaactcaaaacttgattcgagtt 148  Q
    ||||||||| ||||||||| |||||| ||||  || |||| | | |||||||||||||||||| ||| |  |||||||| ||||||||||    
T  19561546 caattagggctggaaatgagtcgagtcgagttgaattcgtctgagctcgactcgataagaattagtttagttcaaaactcgattcgagtt 19561457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 39714828 - 39714880
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||| ||||||||| |||||||||||||||| | ||||||| |||||||    
T  39714828 ctcgactcaataagaattagttcaactcaaaactttactcgagttcgacacga 39714880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 39943826 - 39943774
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||| ||| ||||| |  |||||||||||||||    
T  39943826 ctcgactcgataagaattggttcagctcgaaactcggctcgagtttgacacga 39943774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 25252918 - 25252964
Alignment:
Q  102 aactcgactcgataagaattggttcaactcaaaacttgattcgagtt 148  Q
    |||||||||||||||||||||||||  ||||||||| || |||||||    
T  25252918 aactcgactcgataagaattggttcggctcaaaactcgactcgagtt 25252964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 2868887 - 2868834
Alignment:
Q  105 tcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacgatt 158  Q
    |||||||||||| ||||||||||||| |||||| || | |||||||| ||||||    
T  2868887 tcgactcgataaaaattggttcaacttaaaactcgactagagtttgatacgatt 2868834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 39429503 - 39429552
Alignment:
Q  107 gactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||||||    
T  39429503 gactcgataagaattggttcgactcgaaacttgattcgagttcgacacga 39429552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 18250741 - 18250688
Alignment:
Q  103 actcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    ||||||||||||||||||||||||  ||| |||||||| |||||||||| ||||    
T  18250741 actcgactcgataagaattggttcggctcgaaacttgactcgagtttgaaacga 18250688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 17026093 - 17026040
Alignment:
Q  103 actcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    ||||||||||||||||||||||||  ||| ||||| || |||||||||| ||||    
T  17026093 actcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacga 17026040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 20260025 - 20259972
Alignment:
Q  103 actcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    ||||||||||||||||||||||||| || |||||| |  ||||||| |||||||    
T  20260025 actcgactcgataagaattggttcagcttaaaactcggctcgagttcgacacga 20259972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 31490742 - 31490790
Alignment:
Q  103 actcgactcgataagaattggttcaactcaaaacttgattcgagtttga 151  Q
    |||| ||| |||||||||||||||| ||||||| |||| ||||||||||    
T  31490742 actcaacttgataagaattggttcagctcaaaatttgactcgagtttga 31490790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 43052328 - 43052380
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||  ||| |||||||  ||||||| |||||||    
T  43052328 ctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacga 43052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 54625913 - 54625836
Alignment:
Q  60 aattagggttggaaatgaatcgagttgagtcaaactcgtttaaactcgactcgataagaattggttcaactcaaaact 137  Q
    ||||| |||||||||||| |||||| ||||| || | |||  | |||||||| |||||||||||||||||||||||||    
T  54625913 aattatggttggaaatgagtcgagtcgagtcgaatttgttcgagctcgactcaataagaattggttcaactcaaaact 54625836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 51409209 - 51409156
Alignment:
Q  103 actcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    ||||||||||||||||||| ||||  ||| ||||| |||||||||| |||||||    
T  51409209 actcgactcgataagaatttgttcggctcgaaactcgattcgagttcgacacga 51409156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 52705639 - 52705684
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagttt 149  Q
    |||||||||||||||||||||||  ||| ||||| |||||||||||    
T  52705639 ctcgactcgataagaattggttcggctcgaaactcgattcgagttt 52705684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 44377651 - 44377703
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||  ||| ||||| || |||||||||| ||||    
T  44377651 ctcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacga 44377703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 49820424 - 49820476
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||  ||| ||||| || ||||||| |||||||    
T  49820424 ctcgactcgataagaattggttcggctcgaaactcgactcgagttcgacacga 49820476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 50711535 - 50711491
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtt 148  Q
    |||||||||||||||||||||||  ||||||||| | ||||||||    
T  50711535 ctcgactcgataagaattggttcggctcaaaactcggttcgagtt 50711491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 13311393 - 13311438
Alignment:
Q  103 actcgactcgataagaattggttcaactcaaaacttgattcgagtt 148  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||    
T  13311393 actcgactcgataagaattggttcgactcaaaactcggttcgagtt 13311438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 6998622 - 6998690
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacgattaaagttcacgaaca 172  Q
    |||||||||||||||||| | ||  ||| ||||| || ||||||| ||| || ||||||||||||||||    
T  6998622 ctcgactcgataagaatttgctcggctcgaaactcgactcgagttcgactcgtttaaagttcacgaaca 6998690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 8597528 - 8597464
Alignment:
Q  73 aatgaatcgagttgagtcaaactcgtttaaactcgactcgataagaattggttcaactcaaaact 137  Q
    ||||| |||||| || ||||| || | ||| ||||||| |||||||||||||||| |||||||||    
T  8597528 aatgattcgagtcgattcaaattcttctaagctcgactagataagaattggttcagctcaaaact 8597464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 18756 - 18808
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||  ||||||||| | |||||||| |||||||    
T  18756 ctcgactcgataagaattggttcggctcaaaactcggttcgagttcgacacga 18808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 21681718 - 21681664
Alignment:
Q  102 aactcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||||| || |||||| |  ||||||| |||||||    
T  21681718 aactcgactcgataagaattggttcagcttaaaactcggctcgagttcgacacga 21681664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 1507 - 1455
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||  ||| ||||| || |||||||||| ||||    
T  1507 ctcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacga 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 18879666 - 18879718
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||  ||| |||||||  ||||||| |||||||    
T  18879666 ctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacga 18879718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 28430595 - 28430639
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtt 148  Q
    |||||||||||||||||| ||||| ||||||||| || |||||||    
T  28430595 ctcgactcgataagaattagttcagctcaaaactcgactcgagtt 28430639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 31620007 - 31620059
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    ||||| ||||||||| |||||||| ||||||||| | ||| ||||||||||||    
T  31620007 ctcgattcgataagatttggttcagctcaaaactcggttcaagtttgacacga 31620059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 32157479 - 32157427
Alignment:
Q  104 ctcgactcgataagaattggttcaactcaaaacttgattcgagtttgacacga 156  Q
    |||||||||||||||||||||||  ||| |||||||  ||||||| |||||||    
T  32157479 ctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacga 32157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University