View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_low_42 (Length: 344)

Name: NF14484_low_42
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_low_42
NF14484_low_42
[»] chr4 (20 HSPs)
chr4 (7-344)||(2621028-2621365)
chr4 (112-269)||(2367648-2367805)
chr4 (142-277)||(2486229-2486364)
chr4 (159-254)||(5106333-5106428)
chr4 (159-277)||(5102106-5102224)
chr4 (144-265)||(2547466-2547587)
chr4 (132-253)||(12124770-12124891)
chr4 (156-256)||(2472035-2472135)
chr4 (142-265)||(2491062-2491185)
chr4 (159-277)||(2519155-2519273)
chr4 (216-277)||(2382562-2382623)
chr4 (142-277)||(2525679-2525814)
chr4 (112-253)||(2373212-2373352)
chr4 (171-271)||(2391036-2391136)
chr4 (163-331)||(2477442-2477604)
chr4 (142-261)||(2467468-2467587)
chr4 (142-277)||(5035544-5035679)
chr4 (145-187)||(1517029-1517071)
chr4 (290-335)||(2486159-2486204)
chr4 (139-227)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (159-256)||(2576415-2576512)
[»] chr1 (1 HSPs)
chr1 (156-256)||(15837979-15838079)
[»] chr5 (1 HSPs)
chr5 (131-187)||(12846948-12847004)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 2621028 - 2621365
Alignment:
Q  7 catcatcattatcataatcattgacattcaatattccaaaaacaatggcggaaacatgttcattcttaccagaggagtggtgggagtgtatcttcaagtt 106  Q
    |||||||||| ||||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621028 catcatcattgtcatagttattgacatccaatattccacaaacaatggcggaaacatgttcattcttaccagaggagtggtgggagtgtatcttcaagtt 2621127  T
Q  107 agttgacgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatc 206  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621128 agttgacgatggcgacaacaaccattactgggaacctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatc 2621227  T
Q  207 tccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcacgggcttctctacagaaagtgacctcgacg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621228 tccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcacgggcttctctacagaaagtgacctcgacg 2621327  T
Q  307 agcttcttactaatatatccactttccctgtagacatc 344  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2621328 agcttcttactaatatatccactttccctgtagacatc 2621365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 2367648 - 2367805
Alignment:
Q  112 acgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccga 211  Q
    ||||| ||||||||||||  |||||||||||||| ||| |||| |||||||| ||| | ||||||||||||||||| || ||||||||  |||| |||||    
T  2367648 acgacagcgacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccatagcaatgtccga 2367747  T
Q  212 taaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctc 269  Q
    |||||| ||||||||| ||  |||||| ||| | |||||||| ||  |||||||||||    
T  2367748 taaaacaatccctttcctttatcgccttttccaaaggttccccaacctcacatccctc 2367805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 2486364 - 2486229
Alignment:
Q  142 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 241  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||| || |||||  ||||||||||||| ||||| ||||||||| ||| ||| |||||    
T  2486364 ctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatcgtctctt 2486265  T
Q  242 cgacaggttccctaatatcacatccctcaacatcac 277  Q
      |  ||||||||||| | ||||||| ||| |||||    
T  2486264 ttatgggttccctaatgttacatcccacaatatcac 2486229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 5106333 - 5106428
Alignment:
Q  159 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccct 254  Q
    ||||||||||||||||||||||||||||  || |||||  |||||||| |  || |||||||||||||||||| |||||||||| | |||||||||    
T  5106333 aaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattcatcgcctcttcaaaaggttccct 5106428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 5102106 - 5102224
Alignment:
Q  159 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaata 258  Q
    |||||||||||||| ||||| ||  |||| || |||||  |||||||| | |||  |||||||||||||||||||| ||| ||||| |||||||||||      
T  5102106 aaacagtttttgtctatcactaatagtcttcgattctcggtcacaatcactgatcgaaccatccctttcattcctctccttttcgaaaggttccctaacg 5102205  T
Q  259 tcacatccctcaacatcac 277  Q
    ||||||| |||||||||||    
T  5102206 tcacatcactcaacatcac 5102224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 265
Target Start/End: Complemental strand, 2547587 - 2547466
Alignment:
Q  144 ctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcg 243  Q
    |||||| |||| |||||||||||| ||||||||||||||||||| ||||||||  |||||||||||  | | | ||||| || | |||||| | |||||     
T  2547587 ctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcatatcatcctttcccttcctcacttcttcc 2547488  T
Q  244 acaggttccctaatatcacatc 265  Q
    | ||||||||||| ||||||||    
T  2547487 aaaggttccctaacatcacatc 2547466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 12124891 - 12124770
Alignment:
Q  132 tacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattc 231  Q
    |||||||||||||||||| | || |||||||| ||| | ||||||||||||||||| |  || |||||| ||||||| ||| |||| ||||||||| ||     
T  12124891 tacttggaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaatccctttccttg 12124792  T
Q  232 ctcgcctcttcgacaggttccc 253  Q
      ||||||||| | ||||||||    
T  12124791 accgcctcttccaaaggttccc 12124770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 2472135 - 2472035
Alignment:
Q  156 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttcccta 255  Q
    |||||||||||||| ||||||||||| |||||  | |||||| ||||||||| |  | |||| ||||||||| ||| || ||||||||| ||||||||||    
T  2472135 tccaaacagtttttctccatcaccaatcgtctctgattctccctcacaatctactgtgaaacaatccctttccttcatcacctcttcgaaaggttcccta 2472036  T
Q  256 a 256  Q
    |    
T  2472035 a 2472035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 265
Target Start/End: Complemental strand, 2491185 - 2491062
Alignment:
Q  142 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 241  Q
    ||||||| ||||| || ||||||||| |||||||||| |||||||| || || ||  ||||||||||||||  ||| ||||||||| ||  ||| |||||    
T  2491185 ctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttccttaatcgtctctt 2491086  T
Q  242 cgacaggttccctaatatcacatc 265  Q
     || ||||||||||| || |||||    
T  2491085 tgaaaggttccctaacattacatc 2491062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 2519273 - 2519155
Alignment:
Q  159 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaata 258  Q
    ||||||||| ||||||||||||||||| | || | |||  |||||||||| ||| |||| ||||||||| ||| ||| ||||| || |||||||| ||      
T  2519273 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaacg 2519174  T
Q  259 tcacatccctcaacatcac 277  Q
    | ||||| |||||||||||    
T  2519173 ttacatcactcaacatcac 2519155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 2382562 - 2382623
Alignment:
Q  216 accatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcac 277  Q
    |||||||||||||||||||||||||||   ||| |||||||| ||||||||||||| |||||    
T  2382562 accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcac 2382623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 2525814 - 2525679
Alignment:
Q  142 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 241  Q
    ||||||||||||| || ||||||||| |||||||||||||| |||| || ||||   ||||||||||| ||  ||| ||||||||  ||  ||| |||||    
T  2525814 ctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaactatcccttttcttaatcgtctctt 2525715  T
Q  242 cgacaggttccctaatatcacatccctcaacatcac 277  Q
     || ||||||||||| ||  |||| ||||| |||||    
T  2525714 tgaaaggttccctaacattgcatcactcaatatcac 2525679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 253
Target Start/End: Original strand, 2373212 - 2373352
Alignment:
Q  112 acgacggcgacaacaaccattacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccga 211  Q
    |||||||| |||||| ||  ||||| |||||||||||| | || |||||||| ||| | ||||||||||| | ||| || ||||||||  |||| | |||    
T  2373212 acgacggcaacaacagccgctacttcgaacctctctccgttgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgt-cga 2373310  T
Q  212 taaaaccatccctttcattcctcgcctcttcgacaggttccc 253  Q
    |||||| || |||||| ||  |||||||||| | ||||||||    
T  2373311 taaaacaattcctttccttaatcgcctcttccaaaggttccc 2373352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 271
Target Start/End: Original strand, 2391036 - 2391136
Alignment:
Q  171 tccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctca 270  Q
    ||||||||||||  ||| || |||||||||| |||| || |  |||||||||||||||||||||   ||||| |  ||||| ||||| ||||||||||||    
T  2391036 tccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctca 2391135  T
Q  271 a 271  Q
    |    
T  2391136 a 2391136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 331
Target Start/End: Complemental strand, 2477604 - 2477442
Alignment:
Q  163 agtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcac 262  Q
    ||||| ||||||| |||||| |||| || |||||  | ||||| |||||| |||||||||||| | ||| ||  |||||  | |||||||||||  ||||    
T  2477604 agtttctgtccataaccaacagtcttcgattctctgtgacaatttccgatcaaaccatcccttcccttcatcctctctttcaaaggttccctaacgtcac 2477505  T
Q  263 atccctcaacatcacgggcttctctacagaaagtgacctcgacgagcttcttactaatatatccacttt 331  Q
    |||||| ||||||||     |||| | |||||||||||| || |||||||||||  | |||||||||||    
T  2477504 atccctaaacatcac-----tctc-agagaaagtgaccttgatgagcttcttacccaaatatccacttt 2477442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 2467587 - 2467468
Alignment:
Q  142 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 241  Q
    |||||||| |||| || ||||||||||||||||| |||||| |||| || |||||| || | || |||||   ||| ||||||||  ||| ||| |||||    
T  2467587 ctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttcatcgtctctt 2467488  T
Q  242 cgacaggttccctaatatca 261  Q
     || |||||||| |||||||    
T  2467487 tgaaaggttccccaatatca 2467468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 5035679 - 5035544
Alignment:
Q  142 ctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 241  Q
    |||| ||| |||| || ||||||||| | ||||||||||||||||| || ||||   ||| |||||| ||   ||| ||||||||| ||  ||| |||||    
T  5035679 ctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttccttagtcgtctctt 5035580  T
Q  242 cgacaggttccctaatatcacatccctcaacatcac 277  Q
     || |||||||||||||| ||||| ||||| |||||    
T  5035579 tgaaaggttccctaatattacatcactcaatatcac 5035544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 1517029 - 1517071
Alignment:
Q  145 tctccctcgtgtccaaacagtttttgtccatcaccaaccgtct 187  Q
    |||||||||| |||||||| || ||||||||||||||||||||    
T  1517029 tctccctcgtttccaaacaattcttgtccatcaccaaccgtct 1517071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 2486204 - 2486159
Alignment:
Q  290 agaaagtgacctcgacgagcttcttactaatatatccactttccct 335  Q
    |||||||||||||| ||||||||||||  |||| ||||||||||||    
T  2486204 agaaagtgacctcggcgagcttcttacacatatctccactttccct 2486159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 12126940 - 12126852
Alignment:
Q  139 aacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttc 227  Q
    ||||||||||| | || |||||||| ||| | ||||||||||||||||| |  ||||||||| || |||| ||| |||  |||||||||    
T  12126940 aacctctctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctccatcgcagtctcagatgaaaaaatccctttc 12126852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 2576415 - 2576512
Alignment:
Q  159 aaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaa 256  Q
    ||||||||||| ||||||||||| ||||| || |||||  |||||||| |||||  ||||||||||||||||  |||||||||||| ||| |||||||    
T  2576415 aaacagtttttatccatcaccaatcgtcttcgattctcggtcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaa 2576512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 15837979 - 15838079
Alignment:
Q  156 tccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttcccta 255  Q
    |||||||||||| | ||||||||||||||||| || |||||| ||| ||||   ||| |||| |||||||||||||||  ||||||| | ||||||||||    
T  15837979 tccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattcctaacctcttccaaaggttcccta 15838078  T
Q  256 a 256  Q
    |    
T  15838079 a 15838079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 12847004 - 12846948
Alignment:
Q  131 ttacttggaacctctctccctcgtgtccaaacagtttttgtccatcaccaaccgtct 187  Q
    ||||||||||| |||||||||||| ||||| |||||  | |||||||||||||||||    
T  12847004 ttacttggaacatctctccctcgtttccaagcagttcctctccatcaccaaccgtct 12846948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University