View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_low_43 (Length: 336)
Name: NF14484_low_43
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_43 |
 | |
|
| [»] scaffold0316 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 92 - 327
Target Start/End: Complemental strand, 53372008 - 53371773
Alignment:
| Q |
92 |
ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaa |
191 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53372008 |
ggagtgcagatctgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
53371909 |
T |
|
| Q |
192 |
aacatcaattgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctaaccccaaccat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53371908 |
cacatcaattgatgaaagccatagagaatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat |
53371809 |
T |
|
| Q |
292 |
atccaactatttctcttctctacacctatgcttctc |
327 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
53371808 |
atccaactatttctcttctctccacctgtgattctc |
53371773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 92 - 327
Target Start/End: Original strand, 23010942 - 23011177
Alignment:
| Q |
92 |
ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaa |
191 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23010942 |
ggagtgcagatctgctccatttatgcagctgtccatttacctggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaa |
23011041 |
T |
|
| Q |
192 |
aacatcaattgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctaaccccaaccat |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23011042 |
cacatcaattgatgaaagtcatagagaatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat |
23011141 |
T |
|
| Q |
292 |
atccaactatttctcttctctacacctatgcttctc |
327 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
23011142 |
atccaactatttctcttctctccacctgtgattctc |
23011177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 21604173 - 21604207
Alignment:
| Q |
177 |
atggctaggattaaaaacatcaattgatgaaagcc |
211 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
21604173 |
atggctaggattaaaaacatgaattgatgaaagcc |
21604207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 92 - 327
Target Start/End: Complemental strand, 3127 - 2892
Alignment:
| Q |
92 |
ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaa |
191 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
3127 |
ggagtgcagatctgctccatttatgcagctgtccatttacccgattctcttcactgatggatgacacgtggcaactaaaaatcagatggttaggattaaa |
3028 |
T |
|
| Q |
192 |
aacatcaattgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctaaccccaaccat |
291 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3027 |
cacatcaattgatgaaagccatagataatcaattccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctgaccccaaccat |
2928 |
T |
|
| Q |
292 |
atccaactatttctcttctctacacctatgcttctc |
327 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
2927 |
atccaactatttctcttctctccacctgtgattctc |
2892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 92 - 327
Target Start/End: Original strand, 27117753 - 27117988
Alignment:
| Q |
92 |
ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaa |
191 |
Q |
| |
|
||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
27117753 |
ggagtccagatctgctcaatttatgcagttctccatttacccggttctcttcaccgatggatgacacatggcaactaaaaatccgatagctaggattaaa |
27117852 |
T |
|
| Q |
192 |
aacatcaattgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctccattctccatcgctaaccccaaccat |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
27117853 |
cacatcaattgatgaaagccagagagaatcacttccatccctgacccccaatcatagcaactactcctcttctcttttctccatcgctgaccccaaccat |
27117952 |
T |
|
| Q |
292 |
atccaactatttctcttctctacacctatgcttctc |
327 |
Q |
| |
|
||||||||||| ||||||||| ||||| || ||||| |
|
|
| T |
27117953 |
atccaactattcctcttctctccacctgtgattctc |
27117988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 27118479 - 27118418
Alignment:
| Q |
110 |
atttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaa |
171 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || || ||||||||||||||||||| ||||| |
|
|
| T |
27118479 |
atttatgcagctgtctgtttacccagttctttttacggatggatgacatgtggcaattaaaa |
27118418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 104 - 241
Target Start/End: Original strand, 32239441 - 32239578
Alignment:
| Q |
104 |
tgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaaaacatcaattga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32239441 |
tgctccatttatgcagctgtccatttactcagttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaacacatcaattga |
32239540 |
T |
|
| Q |
204 |
tgaaagccatagagaatcacttccatccctgacctcca |
241 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32239541 |
tgaaagccatagagaatcacttccatctctgacctcca |
32239578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 32240131 - 32240014
Alignment:
| Q |
93 |
gagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggatta-aa |
191 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
32240131 |
gagtgcagatctgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacacgtggcaactaaaaatcagatggctaggattaaaa |
32240032 |
T |
|
| Q |
192 |
aacatcaattgatgaaag |
209 |
Q |
| |
|
||||||| || ||||||| |
|
|
| T |
32240031 |
aacatcattttatgaaag |
32240014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 32239574 - 32239638
Alignment:
| Q |
263 |
ctccattctccatcgctaaccccaaccatatccaactatttctcttctctacacctatgcttctc |
327 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
32239574 |
ctccattcttcatcgctaaccccaaccatatccaactatttctcttctctacacctgtgattctc |
32239638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 51165516 - 51165436
Alignment:
| Q |
92 |
ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaa |
172 |
Q |
| |
|
||||||||||| |||||||||| | | ||||||| |||||||||||| ||||| ||| |||||| ||||||| |||||| |
|
|
| T |
51165516 |
ggagtgcagatctgctccatttttatatctgtccagttacccggttcttttcacagatacatgacacgtggcaattaaaaa |
51165436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 99 - 265
Target Start/End: Original strand, 7266610 - 7266775
Alignment:
| Q |
99 |
agatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgacatgtggcaactaaaaatcagatggctaggattaaaaacatca |
198 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||||||||||||| |||| |||| | |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
7266610 |
agatctgctccatttatgcatctatccatttacccggttctcttcaccgatgaatgatacatggcaattaaaaactccatggctaggattaaaaacatca |
7266709 |
T |
|
| Q |
199 |
attgatgaaagccatagagaatcacttccatccctgacctccaatcacagcaactactcctcttctc |
265 |
Q |
| |
|
||| ||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
7266710 |
atttatgaaagccatggagaagcacttccatccctgacc-ccaatcacaataactactcctcttctc |
7266775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 39073914 - 39073988
Alignment:
| Q |
18 |
agatatgtctttgatgtaaagtgtatatgttgagcagatatccaattgtctaaattttttgcgtatatattcgag |
92 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
39073914 |
agatatgtctttgatgtaaagtgtagatgttgagcagctatccaattatctaaatttcttgcgtatatattcgag |
39073988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 41763787 - 41763852
Alignment:
| Q |
92 |
ggagtgcagatgtgctccatttatgcagctgtccatttacccggttctcttcactgatggatgaca |
157 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
41763787 |
ggagtgcagatctgctccatttatgcaactgtccatttatccgattctcttcaccgatggatgaca |
41763852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University