View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_50 (Length: 327)
Name: NF14484_low_50
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 35978876 - 35979189
Alignment:
| Q |
2 |
tgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaagccctacatctttcgatactagaaaagaggcagagcaggctgctctacaa |
101 |
Q |
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| T |
35978876 |
tgacattcgctataatgctacagttgttgttgatgggaaatcgtttaaaagccctacatctttcgatactagaaaagaggcagagcaggctgctctacaa |
35978975 |
T |
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| Q |
102 |
attgttgacatgtttcaggcaagatcagcccttgtaatttttcttgtgattctaacttgac----ttttatttttggatattttatgatcataaatccat |
197 |
Q |
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| T |
35978976 |
attgttgacatgtttcaggcaagatcagcccttgtaatttttcttgtgattctaacttgacttttttttttttttggatattttatgatcataaatccat |
35979075 |
T |
|
| Q |
198 |
aaccagatgttggagttggaggttacatatcaaaatagaacttaatctctttgacctattagtgtgttagtctttttaatgaaacctcatagtgaactaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35979076 |
aaccagatgttggagttggaggttacatatcaaaatagaacttaatctctttgacctattagtgtgttagtctttttaatgaaacctcatagtgaactaa |
35979175 |
T |
|
| Q |
298 |
acctttcaagtaca |
311 |
Q |
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|||||||||||||| |
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| T |
35979176 |
acctttcaagtaca |
35979189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 35956191 - 35956309
Alignment:
| Q |
1 |
atgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaagccctacatctttcgatactagaaaagaggcagagcaggctgctctaca |
100 |
Q |
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|||||||||||||||| |||| |||||| ||||||||||||| ||| ||||||| ||||||||| | |||| |||||||||||||||||||||| | | |
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| T |
35956191 |
atgacattcgctataaagctattgttgttattgatgggaaatcatttgaaagcccaacatctttcaacactataaaagaggcagagcaggctgctgcaaa |
35956290 |
T |
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| Q |
101 |
aattgttgacatgtttcag |
119 |
Q |
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| T |
35956291 |
atttgttggcatgtttcag |
35956309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 275
Target Start/End: Original strand, 35968883 - 35969041
Alignment:
| Q |
117 |
caggcaagatcagcccttgtaatttttcttgtgattctaacttgac---ttttatttttggatattttatgatcat-aaatccataaccagatgttggag |
212 |
Q |
| |
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|||| |||||||||||||||||||| | ||||||||||| || || |||||||||| |||||||||||||| ||||| ||||| ||||||||||| |
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| T |
35968883 |
caggtaagatcagcccttgtaatttcttatgtgattctaaattaacattttttattttttt-tattttatgatcatcaaatcgataactagatgttggag |
35968981 |
T |
|
| Q |
213 |
ttggaggttacatatcaaaatagaacttaatctctttgacctattagtgtgttagtcttttta |
275 |
Q |
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| T |
35968982 |
---ggtattatatatcaaaatagaacttaatctcattgacctattagtgtgtcagtcttttta |
35969041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 35951688 - 35951772
Alignment:
| Q |
11 |
ctataaggctacagttgttgttgatgggaaatcgtttaaaagccctacatctttcgatactagaaaagaggcagagcaggctgct |
95 |
Q |
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|||||| ||||| |||||| |||||| |||||| ||| |||||||||||| |||| | ||| |||||||||||| ||||||||| |
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| T |
35951688 |
ctataaagctactgttgttattgatgagaaatcatttgaaagccctacatttttcaactctataaaagaggcagaacaggctgct |
35951772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 35971751 - 35971842
Alignment:
| Q |
1 |
atgacattcgctataaggctacagttgttgttgatgggaaatcgtttaaaagccctacatctttcgatactagaaaagaggcagagcaggct |
92 |
Q |
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||||| |||| ||||| |||| |||||| ||||||| ||||| ||| ||||||| |||| ||| |||||| | ||||||||||||||||| |
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| T |
35971751 |
atgactttcgttataaagctattgttgttattgatggaaaatcatttgaaagcccaacatttttaaatactatagaagaggcagagcaggct |
35971842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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