View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_52 (Length: 325)
Name: NF14484_low_52
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 8787224 - 8786971
Alignment:
| Q |
13 |
attattctgcaatcttcacttacatcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcaccgcagttgtccttgaag |
112 |
Q |
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| T |
8787224 |
attattctgcaatcttcacttacatcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcatcgcagttgtccttgaag |
8787125 |
T |
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| Q |
113 |
cactaacagcacgattatgcttcaaaatatcattcctggcctcccgtcttcttaatagcctttgtaacctttttgttttatcatcagcatgagagccgtc |
212 |
Q |
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| T |
8787124 |
cactaacggcacgattatgcttcaaaatatcattcctggcctcccgtcttcttaatagccttcgtaacctttttgttttatcatcagcatgagagccatc |
8787025 |
T |
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| Q |
213 |
cgggttaaacatgatcaaagcacgctccatttttcctttaatgggaacaaaatc |
266 |
Q |
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| T |
8787024 |
cgggttaaacatgatgaaagcacgctcgatttttcctttaatgggaacaaaatc |
8786971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 63 - 261
Target Start/End: Complemental strand, 8781476 - 8781278
Alignment:
| Q |
63 |
atctattaagacattcgtatttccacaaatcaccgcagttgtccttgaagcactaacagcacgattatgcttcaaaatatcattcctggcctcccgtctt |
162 |
Q |
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| T |
8781476 |
atctattaaaacattcgtatttccacaaatcatcgcagttgttcttgaagcactaacgacacgattgtgcttcaaactattattcctggccttccgtctt |
8781377 |
T |
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| Q |
163 |
cttaatagcctttgtaacctttttgttttatcatcagcatgagagccgtccgggttaaacatgatcaaagcacgctccatttttcctttaatgggaaca |
261 |
Q |
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| T |
8781376 |
cttaatatcctttctaacctttttgttttatcatcagtatgagaatcatccaggttaaacatgattaaagcacgctccatttttcttttaatgggaaca |
8781278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 8781670 - 8781550
Alignment:
| Q |
73 |
acattcgtatttccacaaatcaccgcagttgtccttgaagcactaacagcacgattatgcttcaaaatatcattcctggcctcccgtcttcttaatagcc |
172 |
Q |
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| T |
8781670 |
acatttgtatttgcacaaatcatcgcagttgttcttgaagcactagtgacacgtttgcgcttcaaactatcacttctggcctcttgtcttcttgatagcc |
8781571 |
T |
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| Q |
173 |
tttgtaacctttttgttttat |
193 |
Q |
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| T |
8781570 |
tttttaacccttttcttttat |
8781550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 8786923 - 8786883
Alignment:
| Q |
267 |
aacagcgaaacaatcaattttatcgatataactgatactct |
307 |
Q |
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| T |
8786923 |
aacagcgaaacaatcaattttatcgatacaactgatactct |
8786883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 8764560 - 8764421
Alignment:
| Q |
22 |
caatcttcacttacatcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcaccgcagttgtccttgaagcactaacag |
121 |
Q |
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| T |
8764560 |
caatcttcatttgtatcatcatctatcgtatgatcactttcgtctattaaaattgtggtattttcacaaatctccgcaggtgtctttgtggcactagcaa |
8764461 |
T |
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| Q |
122 |
cacgattatgcttcaaaatatcattcctggcctcccgtct |
161 |
Q |
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| T |
8764460 |
catgattgtgcttcaaactatcattcatcgcttcccgtct |
8764421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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