View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_55 (Length: 300)
Name: NF14484_low_55
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 1156018 - 1155735
Alignment:
| Q |
1 |
gaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacctaagtaattaggcatgaggaatgggaaccattaactttatgt |
100 |
Q |
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| T |
1156018 |
gaaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacctaagtaattaagcatgaggaatgggaaccattaactttatgt |
1155919 |
T |
|
| Q |
101 |
tgtttgtttaagagatgttaatagccttagaggaagcttgtaatgaaaaacatttctagactactattttgttattgttatatcatttttggcactaccg |
200 |
Q |
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| T |
1155918 |
tgtttgtataagatatgttag-agccttagaggaagcttgtaatgaaaaacatttctagattactattttgttattgttatatcatttttggcactaccg |
1155820 |
T |
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| Q |
201 |
ttttaagatcttaattttgagtttagaaacacatatatgtaaaatcagttacatttctttcctctccacattatctgtatattct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1155819 |
ttttaagatcttaattttgagtttagaaacacatatatgtaaaatcagttacatttctttcctctccacattatctgtattttct |
1155735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 23284309 - 23284254
Alignment:
| Q |
2 |
aaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
57 |
Q |
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| T |
23284309 |
aaggcagctttaagctcaacgcctgctctaacgaatggtctccgtcacttgttaac |
23284254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 23250139 - 23250084
Alignment:
| Q |
2 |
aaggcagctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaac |
57 |
Q |
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| T |
23250139 |
aaggctgctttatgctcaacgtctgctctaacgaatggtctccgtcacttgttaac |
23250084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 23321559 - 23321509
Alignment:
| Q |
8 |
gctttaagctcaacatctgctctaacgaatggtctccgtcacttgctaacc |
58 |
Q |
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||||||| |||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
23321559 |
gctttaacctcaacatctgctctaacaaatggtctcagtcacttgttaacc |
23321509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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