View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_57 (Length: 292)
Name: NF14484_low_57
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_57 |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 41781826 - 41782097
Alignment:
| Q |
17 |
ttatttgagtatgaaatctctctagttctcnnnnnnnttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctctta |
116 |
Q |
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| T |
41781826 |
ttatttgagtaagatatctctctagttctcaaaaaaattcatatcatttattgatattagttttgaactctaaattttttgacttttttctagcctctta |
41781925 |
T |
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| Q |
117 |
attgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg |
216 |
Q |
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| T |
41781926 |
attgttaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg |
41782025 |
T |
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| Q |
217 |
tgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggt |
292 |
Q |
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| T |
41782026 |
tga----catgttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggccatttggt |
41782097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 292
Target Start/End: Complemental strand, 40519787 - 40519547
Alignment:
| Q |
54 |
ttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctcttaattgctaaaactaacaatgcaagaggctaatatga-- |
151 |
Q |
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| T |
40519787 |
ttcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgca-gaggataatataaca |
40519689 |
T |
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| Q |
152 |
-aaataaaaattcgaatacaaagtcatcgcaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgcatgttgaagttcttcatgagac |
246 |
Q |
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| T |
40519688 |
aaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatg----ttgaagttgttcatgagac |
40519593 |
T |
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| Q |
247 |
catggggaataattatcacattaaactgttgatatggccatttggt |
292 |
Q |
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| T |
40519592 |
catggagaataattgtcacattaaattgttgatgtgaccatctggt |
40519547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 40510685 - 40510645
Alignment:
| Q |
180 |
caatgttaatatgttaatttacataaaagtgtgaatgtgac |
220 |
Q |
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| T |
40510685 |
caatgttaatgtgttaaattacataaaagtgtgaatgtgac |
40510645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 106 - 292
Target Start/End: Complemental strand, 18163764 - 18163583
Alignment:
| Q |
106 |
ctagcctcttaattgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataa |
205 |
Q |
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| T |
18163764 |
ctagcctcttagttgttaaaactaacaatgca-gaggctaatatgaacaaaaaagtcctaaaacaaagtcatcaaaatgttaatatgttaatttacataa |
18163666 |
T |
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| Q |
206 |
aagtgtgaatgtgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggt |
292 |
Q |
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| T |
18163665 |
aagtgtgaatgtga----catgttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatctggt |
18163583 |
T |
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