View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_59 (Length: 285)
Name: NF14484_low_59
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 43108637 - 43108385
Alignment:
| Q |
1 |
taacttgtgtccttaaaacacaagttaacataacccannnnnnnacttatcaattgactaccataatatatcctccgttaattgattttgcgatttttaa |
100 |
Q |
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| T |
43108637 |
taacttgtacccttaagacacaagttaacataacccatttttttact-atcaattgactaccataatatatcctccgttaattgattttgcgatttttaa |
43108539 |
T |
|
| Q |
101 |
gcctatcagaaatcgggtttgaatagtatctattttcaagacaattttcaattgtacaattttcaagacaatgcatggttaccacttaccaccaaaaaga |
200 |
Q |
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| T |
43108538 |
gcctatcagaaatcgggtttgaatagtatctattttcaagacaattttcaa---------------gacaatgcagggttaccacttaccaccaaaaaga |
43108454 |
T |
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| Q |
201 |
caatgcatggttgaagctagattcggaatgtgttacataacgagactaaccgaaagataacttcggtac |
269 |
Q |
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| T |
43108453 |
caatgcatggttgaagctagattcggaatgtgttacataacgagactaaccgaaagataacttcggtac |
43108385 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28324611 - 28324578
Alignment:
| Q |
1 |
taacttgtgtccttaaaacacaagttaacataac |
34 |
Q |
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| T |
28324611 |
taacatgtgtccttaaaacacaagttaacataac |
28324578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14112209 - 14112173
Alignment:
| Q |
1 |
taacttgtgtccttaaaacacaagttaacataaccca |
37 |
Q |
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| T |
14112209 |
taacttgtgtccttaagacacaagttaacatgaccca |
14112173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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