View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_low_6 (Length: 611)
Name: NF14484_low_6
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_6 |
 | |
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| [»] scaffold0470 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 14 - 596
Target Start/End: Original strand, 9830005 - 9830585
Alignment:
| Q |
14 |
attatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatgcgataaggaatgaaacatcacaaat |
113 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9830005 |
attatactctttacaagaatatcaaagtgttttcttggggtatagtcactacggacatttcggtgaggcgaaatgcgataaggaatgaagcatcacaaat |
9830104 |
T |
|
| Q |
114 |
gagtcaaccaatggaagaagcgtgatgcatgtgttgagccacgtgtcgcacaatcacaagggaattcagaatgaaaccacactgcctaagccgtgacacg |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
9830105 |
gagtcaaccattggaagaagcgtgatgcatgtgttgagccacgt-tcgcacaatcacaagggaattcagaatggaaccacactgcctaagacgtgacacg |
9830203 |
T |
|
| Q |
214 |
tgctatgagccacacatcgcgccatcatgnnnnnnnntcgaagtggatcactaccacccttgatgtgacgcagtaaagctggtgtgcatcatgcacacac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9830204 |
tgctatgagccacacatcgcgccatcatgaaaaaaa-tcgaagtggatcgctaccgcccttgatgtgaagcagtaaagctggtgtgcatcatgcacacac |
9830302 |
T |
|
| Q |
314 |
tgctttagaaagtcatggtttacatgcttataaatacagatgccttgtctcacttgaaaaacacactttaacgatgagcgaaagtcgatactacaattta |
413 |
Q |
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|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
9830303 |
tgttttagaaagtcatggtttacatgcttataaatacagatgcattgtctcacttgaaaaacacactttaacgatgagcgaaagtcgatattgcaattta |
9830402 |
T |
|
| Q |
414 |
ggaaggttaccagtgaggaatcaaccaacgatgcttacaattcatgtatttctatacatattattttgtttaggtttaaaatatcatgagtcgttgattt |
513 |
Q |
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|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
9830403 |
ggaaggttaccagcgagaaatcaaccaacgatgcttacaattcatgtatttctatacatattattttgtttaggtttaaaatatcatgagtagctgattt |
9830502 |
T |
|
| Q |
514 |
cctaggttatgtcatatagatgaccatctctgtaactgcttgaactatgtaatccattgatcactttgttaaaagtttccatt |
596 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9830503 |
cctaagttatgtcatatagatgaccatctctataactacttgaactatgtaatccattgatcactttgttaaaagtttccatt |
9830585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 6623250 - 6623177
Alignment:
| Q |
15 |
ttatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg |
88 |
Q |
| |
|
||||||||| || |||| ||||||||||||||||||||| ||||||||||| |||||||| |||| | |||||| |
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|
| T |
6623250 |
ttatactttgtacaagattatcaaagtgatttcttggggaatagtcactactgacatttcagtgaagtgaaatg |
6623177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 6790014 - 6789942
Alignment:
| Q |
16 |
tatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg |
88 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||||| ||||||||||| |||||||| |||| | |||||| |
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|
| T |
6790014 |
tatactttgtacaagattatcaaagtgatttcttggggaatagtcactacagacatttcagtgaagtgaaatg |
6789942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 483
Target Start/End: Original strand, 24555233 - 24555284
Alignment:
| Q |
432 |
aatcaaccaacgatgcttacaattcatgtatttctatacatattattttgtt |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
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|
| T |
24555233 |
aatcaaccaacgatgcttacaattcatgtatttctttgcatattcttttgtt |
24555284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 42448532 - 42448593
Alignment:
| Q |
21 |
tttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggc |
82 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
42448532 |
tttttacaagattattaaagtgatttcttggggtatagtcactacatgcattttggtgaggc |
42448593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 18851634 - 18851562
Alignment:
| Q |
16 |
tatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg |
88 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |
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| T |
18851634 |
tatacattctataagattatcaaagtgatttcttggggtatagtcactacgaacattttggtgaggcaaaatg |
18851562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 565
Target Start/End: Original strand, 13962879 - 13962934
Alignment:
| Q |
510 |
atttcctaggttatgtcatatagatgaccatctctgtaactgcttgaactatgtaa |
565 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||| ||| ||||||||||| |||||| |
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|
| T |
13962879 |
atttcctaggttaggtcatgtagatgaccttctttgtgactgcttgaaccatgtaa |
13962934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 29731964 - 29732048
Alignment:
| Q |
16 |
tatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatgcgataaggaatg |
100 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| || ||||||||||| || || ||| |||||||| ||||| || |||||||| |
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|
| T |
29731964 |
tatactttttacaagagtatcaatgtgattttttcgggtatagtcattatagaagttttggtgaggcaaaatgagacaaggaatg |
29732048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 12674 - 12601
Alignment:
| Q |
15 |
ttatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg |
88 |
Q |
| |
|
||||||||| || |||| ||||||||||||||||||||| ||||||||||| |||||||| |||| | |||||| |
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|
| T |
12674 |
ttatactttgtacaagattatcaaagtgatttcttggggaatagtcactactgacatttcagtgaagtgaaatg |
12601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 426 - 572
Target Start/End: Original strand, 3004179 - 3004326
Alignment:
| Q |
426 |
gtgaggaatcaaccaacgatgcttacaattcatgtatttctatacatattattttgtttaggtttaaaatatcatgagtcgttgatttccta-ggttatg |
524 |
Q |
| |
|
|||||||||| |||||||||| ||| |||||||||||||| | ||||| |||| ||| |||||||||| ||||||| ||| | ||||| ||||| |
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|
| T |
3004179 |
gtgaggaatcgaccaacgatgattatgattcatgtatttcttttcatatacttttatttttgtttaaaataacatgagtagttaaactcctagggttaga |
3004278 |
T |
|
| Q |
525 |
tcatatagatgaccatctctgtaactgcttgaactatgtaatccattg |
572 |
Q |
| |
|
|||| ||||| | | ||| ||||||| | |||||||||||||| |||| |
|
|
| T |
3004279 |
tcatgtagataaacctctttgtaactacatgaactatgtaatctattg |
3004326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 87211 - 87166
Alignment:
| Q |
32 |
atatcaaagtgatttcttggggtatagtcactacggacatttcggt |
77 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
87211 |
atatcaaagtgatttcttggggtgtagtcattatggacatttcggt |
87166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 565
Target Start/End: Complemental strand, 35411399 - 35411342
Alignment:
| Q |
508 |
tgatttcctaggttatgtcatatagatgaccatctctgtaactgcttgaactatgtaa |
565 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
35411399 |
tgattttctaggttaggtcatgtagatgaccctctctataactgcttgaaccatgtaa |
35411342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 2570351 - 2570423
Alignment:
| Q |
16 |
tatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg |
88 |
Q |
| |
|
||||||||||| ||| || |||| |||||||||| ||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
2570351 |
tatactttttacaaggatgtcaacatgatttcttgaggtatagtcactacgaacgttttagtgaggcgaaatg |
2570423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 14614621 - 14614676
Alignment:
| Q |
19 |
actttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttc |
74 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
14614621 |
actttttataagaataattaagtgatttcttgaggcatagtcactacggacgtttc |
14614676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 53087988 - 53088039
Alignment:
| Q |
15 |
ttatactttttataagaatatcaaagtgatttcttggggtatagtcactacg |
66 |
Q |
| |
|
|||| ||||||| |||| |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
53087988 |
ttatgctttttacaagattatcaaagtgattttttggggtatggtcactacg |
53088039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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