View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_61 (Length: 282)
Name: NF14484_low_61
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 37928262 - 37928009
Alignment:
| Q |
11 |
aagaatatagtgactgacctggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttccactcgtccactctgcagctatatc |
110 |
Q |
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| T |
37928262 |
aagaaaatagtgactgacctggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttccactcgtccactctgcagctatatc |
37928163 |
T |
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| Q |
111 |
gttgttgatgcttaacaaaagcttcggcatagctctctctctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttccata |
210 |
Q |
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| T |
37928162 |
gttgttgatgcttaacaaaagcttcggcatagctctctctctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttccata |
37928063 |
T |
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| Q |
211 |
tctctccttacattccagtatctttgtgagttcatccaagcaccatgtggaaga |
264 |
Q |
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| T |
37928062 |
tctctccttacattccagtatctttgtgaattcatccaagcaccatgtggaaga |
37928009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 37959235 - 37959351
Alignment:
| Q |
148 |
tctctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttccatatctctccttacattccagtatctttgtgagttcatcc |
247 |
Q |
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| T |
37959235 |
tctctgatgcctaacatctgacggatccacctcatagaagataggtatcacttcccttccataactcctcttacattggagtatctttgtgagttcatcc |
37959334 |
T |
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| Q |
248 |
aagcaccatgtggaaga |
264 |
Q |
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| T |
37959335 |
aagcaccaagaggaaga |
37959351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 25720676 - 25720443
Alignment:
| Q |
31 |
ggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttccactcgtccactctgcagctatatcgttgttgatgcttaacaaaa |
130 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| |||||| || ||| |||| |||||||||| || |||| |
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| T |
25720676 |
ggttacttgtgaatcccatcctgacagtccagctacttgagttagagcatccttccatgtatccactttgtccctaaatcgctgttgatgctcaataaaa |
25720577 |
T |
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| Q |
131 |
gcttcggcatagctctctctctgatgcctaacagttgacggatccaccttatagaagacaggtatcacttcccttccatatctctccttacattccagta |
230 |
Q |
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||||| || | |||||||| |||| ||||||| |||| ||||||||||| |||||||| |||||||| |||||||||||| | | || || || |||| |
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| T |
25720576 |
gcttcctcaaaactctctctttgattcctaacatttgatggatccaccttgtagaagaccggtatcacatcccttccatatatttgtttgcactcgagta |
25720477 |
T |
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| Q |
231 |
tctttgtgagttcatccaagcaccatgtggaaga |
264 |
Q |
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| T |
25720476 |
tctttgtgagttcatccatacaccatgtggaaga |
25720443 |
T |
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