View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_63 (Length: 277)
Name: NF14484_low_63
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_63 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 37643698 - 37643958
Alignment:
| Q |
18 |
agatgccatcctttggttgtcatatagagtgatggtagttt-------gaagtagtttgaacaatacttatccttttggtttgagtttaggattaacact |
110 |
Q |
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| T |
37643698 |
agatgccatcctttggttgtcatatagagtgatggtagactatgccctgaagtagtttgaacaatacttatccttttggtttgagtttaggattaacact |
37643797 |
T |
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| Q |
111 |
agctttggtgctaagcagaaatgtattccaagtgaggatactacacactcacatgaaaaaacaattcagatggcatcttttgagaggggggttggggtta |
210 |
Q |
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| T |
37643798 |
agctttggtgctaagcagaaatgtattccaagtgaggatactacacgctcacatgaaaaaacaattcagatggcatcttttgagaggggggttggggtta |
37643897 |
T |
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| Q |
211 |
gcacataatactttgaaatagatnnnnnnnnnttatctacttgtttctttaattcttctct |
271 |
Q |
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| T |
37643898 |
gcacataatactttgaaatagataaaaaaaaattatctacttgtttctttaattcttctct |
37643958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 19826422 - 19826483
Alignment:
| Q |
61 |
agtagtttgaacaatacttatccttttggtttgagtttaggattaacactagctttggtgct |
122 |
Q |
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| T |
19826422 |
agtagtttgaacgatacttatccttgtggtttgagtttaggattaacactagctttgatgct |
19826483 |
T |
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