View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_7 (Length: 601)
Name: NF14484_low_7
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 207 - 496
Target Start/End: Complemental strand, 36228118 - 36227832
Alignment:
| Q |
207 |
gaaagtgaaaagagtaaccccaaaaacatataatcgcataactgataaaattgcagccacgcacatattaaactcgctaactttatcacttagtacaata |
306 |
Q |
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| T |
36228118 |
gaaagtgaaaagagtaaccccaaaaacatataatcgcataactgataaaattgcagccacacacatattaaactcgctaactttatcacttagta----- |
36228024 |
T |
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| Q |
307 |
agtaatcacaaccaaagaatacaagttcccgttaaagaaaccctaatcaaaatgtaaaatcatcaaaaactaacatataaaacaccgaaatcaacgcaac |
406 |
Q |
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| T |
36228023 |
-----tcacaaccaaagaatacaagttcccgttaaagaaaccctaatcaaaatgtaaaatcatcaaaaactaacatataaaacaccgaaatcaacgcaac |
36227929 |
T |
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| Q |
407 |
aacaatcagatctaaaagattcaaac-------tcaccaatatcagctccaaaagcaaatagaatgattgaggtttgagacagacatcgtaattata |
496 |
Q |
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| T |
36227928 |
aacaatcagatctaaaagattcaaactcacaactcaccaatatcagctccaaaagcaaatagaatgattgaggtttgagacagacatcgtaattata |
36227832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 36228394 - 36228210
Alignment:
| Q |
14 |
aatatccaaataaataggcatgaaaaatgataaataaagagtgatacctcttcgaaatgacctatcaaacactttgaatagacttcaaatcatcttcggt |
113 |
Q |
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| T |
36228394 |
aatatccaaataaataggcatgaaaaatgataaataaagagtgatacctcttcgaaatgacctgtcaaacactttgaatagacttcaaatcatattcggt |
36228295 |
T |
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| Q |
114 |
tttgttgagctttttctttgaagctcataagtcctcactcgctgcaatttgatatctgaaaacaaagtacaattctcatcaataa |
198 |
Q |
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| T |
36228294 |
tttgttgagctttttctttgaagctcatatgtcctcactcgctgcaatttgatatctgaaaacaaagtacaattctcatcaataa |
36228210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 11237503 - 11237410
Alignment:
| Q |
81 |
aacactttgaatagacttcaaatcatcttcggttttgttgagctttttctttgaagctcataagtcctcactcgctgcaatttgatatctgaaa |
174 |
Q |
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| T |
11237503 |
aacacttagaagaaacttcaaatcatcttatgttttgttgaaatttttcttcgaagctcacaagtcctccctcactgcaatttgatatttgaaa |
11237410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 52566811 - 52566894
Alignment:
| Q |
82 |
acactttgaatagacttcaaatcatcttcggttttgttgagctttttctttgaagctcataagtcctcactcgctgcaatttga |
165 |
Q |
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| T |
52566811 |
acactttgaagagacttcaaatcatcttctgttttgttaaactctttctttgaagctcgcaagttctccctcactgcaatttga |
52566894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 21989819 - 21989856
Alignment:
| Q |
15 |
atatccaaataaataggcatgaaaaatgataaataaag |
52 |
Q |
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| T |
21989819 |
atatccaaagaaataggcatgaaaaatgagaaataaag |
21989856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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