View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14484_low_77 (Length: 232)

Name: NF14484_low_77
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14484_low_77
NF14484_low_77
[»] chr1 (1 HSPs)
chr1 (30-232)||(35140364-35140566)
[»] chr3 (22 HSPs)
chr3 (38-232)||(6259031-6259225)
chr3 (34-232)||(6245122-6245317)
chr3 (34-232)||(13270555-13270753)
chr3 (36-232)||(6142121-6142314)
chr3 (34-232)||(6168726-6168921)
chr3 (34-208)||(6265550-6265721)
chr3 (34-232)||(6882339-6882534)
chr3 (34-232)||(6899923-6900118)
chr3 (34-232)||(6591355-6591547)
chr3 (159-232)||(7749837-7749910)
chr3 (34-229)||(5267869-5268061)
chr3 (159-232)||(6916936-6917009)
chr3 (160-232)||(6520312-6520384)
chr3 (86-232)||(6722145-6722288)
chr3 (34-137)||(8568972-8569075)
chr3 (52-109)||(5298661-5298718)
chr3 (160-232)||(8569095-8569167)
chr3 (85-125)||(6554516-6554556)
chr3 (85-125)||(6735901-6735941)
chr3 (160-232)||(7587682-7587754)
chr3 (37-109)||(7587802-7587874)
chr3 (160-232)||(8471371-8471443)
[»] chr7 (2 HSPs)
chr7 (180-232)||(6573465-6573517)
chr7 (34-113)||(6573322-6573401)
[»] chr4 (1 HSPs)
chr4 (34-106)||(25242184-25242256)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 35140364 - 35140566
Alignment:
30 ttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttaccca 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35140364 ttatctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttaccca 35140463  T
130 agggtgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35140464 agggtgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaa 35140563  T
230 ggg 232  Q
    |||    
35140564 ggg 35140566  T

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Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 6259225 - 6259031
Alignment:
38 agctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaagggtgac 137  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
6259225 agctctgaaaacattggggattctcttgcaaagaaagttctctgaaaatgaatgggttaagatattggagactgatttgtggcgtttacccaagggtgac 6259126  T
138 agcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    | |||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
6259125 aacagcaacatttattccgctttgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcttattgttctatatttcccaaggg 6259031  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 6245317 - 6245122
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||||  || |    
6245317 ctttagctctgaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggttaagatattagagactgatttgtggcgtttacctgagag 6245218  T
134 tgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    |||   |||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
6245217 tga---cagcaacatttattccgttctaagaatgagttaccttaacctcccttccaatctgaagcattgttttgcttattgttctatatttcccaaggg 6245122  T

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Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 13270555 - 13270753
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| ||| |||  || | ||    
13270555 ctttagctctgaaaacattggggattctcttgcaaagaaaattctctgaaattaaatgggttaagatattggagactgatttgtggcatttctccgaagg 13270654  T
134 tgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    |||||||| || || || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
13270655 tgacagcaacagcattttttccattctgagaatgagttaccttagcctaccttccaatctgaagcattgttttgcatattgttctatatttcccaaggg 13270753  T

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Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 6142314 - 6142121
Alignment:
36 ttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaagggtg 135  Q
    ||||||||||||||| |||||||||||||| | ||||||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||||  ||||||    
6142314 ttagctctgaaaacattggggattctcttgaatagaaaattctctgaaattgaatgggttaggatattggagactgatttgtggcgtttaccagagggtg 6142215  T
136 acagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    |   | | |||| | |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| |||| ||||||||||||||||||    
6142214 a---cggaaacattaattccgttctgagaatcagttaccttagcctcccttctgatctgaagcattgttttgcttattgttctatatttcccaaggg 6142121  T

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Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 6168921 - 6168726
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    |||| ||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| || ||||||| ||| |    
6168921 cttttgctctaaaaacattggggattctcttgcaaagaagattctctgaaaatgaatgggttaagatattagagactgatttgtggagtttacctaagag 6168822  T
134 tgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    |||||| ||   || ||||||| |||| |||  ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
6168821 tgacagaag---catttattcctttctaagacagagttaccttaacctcccttcaaatctgaagcattgttttgcatattgttctatatttcccaaggg 6168726  T

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Target: chr3; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 6265721 - 6265550
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||| | || |||||||||| |||||||||||||||||||| || |||||||| ||||    
6265721 ctttaactctgaaaacattggggattctcttccaaagaaaattctctgtaactgaatgggttgagatattggagactgatttgtggtgtttacccgaggg 6265622  T
134 tgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgc 208  Q
    ||||| | |||  |||| |   | |||||| |||  |||||||||||||||| |||||||||||| |||||||||    
6265621 tgacaactgcattaatttt---gctctgaggatgcattaccttagcctccctcccaatctgaagcgttgttttgc 6265550  T

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Target: chr3; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 6882534 - 6882339
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    ||||||| ||||||||| |||||| |||||||| || ||||||||| |||  ||||||| ||||| ||||||||||||||||| ||||||||||| ||||    
6882534 ctttagcactgaaaacattggggaatctcttgctaaaaaaattctctgaatctgaatggattaaggtattggagactgatttgtggcgtttacccgaggg 6882435  T
134 tgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    |||    | | ||| | | |   | |||||| |||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
6882434 tga---aatctacattaacttgttactgagattgagttaccttatcctcccttccaatctgaagcgttgttttgcttattgttctatatttcccaaggg 6882339  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 6900118 - 6899923
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    ||||||||||||||||| |||||| ||||||| ||||||| ||||| |||  ||| ||||||||||| ||||||||||||||  ||||||||||  ||||    
6900118 ctttagctctgaaaacattggggaatctcttggaaagaaagttctctgaacctgattgggttaagatgttggagactgatttctggcgtttaccagaggg 6900019  T
134 tgacagcagcaacaattattccgtt-ctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    | | | || |    ||||  || ||  ||| | |||||||||||| |||||||||||||||||||||||||||||  |||| |||| ||||||| |||||    
6900018 taataacaac----attaaccctttattgaaattgagttaccttaacctcccttccaatctgaagcattgttttgattattgttctttatttccaaaggg 6899923  T

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Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 6591355 - 6591547
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    |||||||||| |||||| |||||   || ||||||| ||||||||| | ||  |||||| | |||||||||||||||||| || ||| |||| |  | ||    
6591355 ctttagctctaaaaacaatggggcaacttttgcaaaaaaaattctctgtaaccgaatggatgaagatattggagactgatatgtggcatttatcagatgg 6591454  T
134 tgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    ||||||||  |||       |||| |||||| |||||||||||| |||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||    
6591455 tgacagcattaacc------ccgtactgagattgagttaccttaacctcccatccaatctgaagcgttgttttgcttattgttctatatttcccaaggg 6591547  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 7749910 - 7749837
Alignment:
159 ctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    |||||| ||| |||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||| |||||    
7749910 ctgagattgaattaccttaacctcccttccaatctgaagcgttgttttgcttattgttctatatttccaaaggg 7749837  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 5268061 - 5267869
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    |||||||| | |||||  |||| | |||||||| ||||||||||||  || ||||||||||||||||||||||||| ||| || |||||||| |  | ||    
5268061 ctttagctgtaaaaactttgggaaatctcttgcgaagaaaattctctcaacatgaatgggttaagatattggagacagatatgtggcgtttatcagaagg 5267962  T
134 tgacagcagcaacaattattccgttctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaa 229  Q
    |||   ||  |||| | |||| || |||||| ||||||||| |   |||||||||||||||||||  |||||| | |||| |||  ||||||||||    
5267961 tga---cattaacattaattcagtactgagattgagttaccatcatctcccttccaatctgaagcgctgtttttcttattgttccttatttcccaa 5267869  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 6917009 - 6916936
Alignment:
159 ctgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||||| || | ||| ||||||||||||||    
6917009 ctgagaatgagttaccttaatctctcttcaaatctgaagcattgttttgcttactgttccatatttcccaaggg 6916936  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 6520312 - 6520384
Alignment:
160 tgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    ||||| ||||||||| ||  |||||||||||||| |||| |||||||||||||| |||||| |||||||||||    
6520312 tgagattgagttaccataatctcccttccaatctaaagcgttgttttgcatattgttctatttttcccaaggg 6520384  T

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Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 6722145 - 6722288
Alignment:
86 tgaatgggttaagatattggagactgatttgcggcgtttacccaagggtgacagcagcaacaattattccgttctgagaatgagttaccttagcctccct 185  Q
    |||||||| | |||||||||||||||||||| || ||||| |  ||||||| | ||   ||| | |  |||| || ||| |||||| | ||| |||||||    
6722145 tgaatgggatcagatattggagactgatttgtggtgtttatcagagggtgagaaca---acattaaccccgtactaagattgagtttctttaacctccct 6722241  T
186 tccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    ||| ||||||||| ||||||||| |||| ||||||||||||||||||    
6722242 tccgatctgaagcgttgttttgcttattgttctatatttcccaaggg 6722288  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 8568972 - 8569075
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgatttgcggcgtttacccaaggg 133  Q
    |||||||| |||||||| |||||| |||||||||||||||||| ||  ||  |||||||  ||| ||||||||||||||| || ||| |||| | |||||    
8568972 ctttagctgtgaaaacattggggaatctcttgcaaagaaaattttctcaaggtgaatggtctaacatattggagactgatatgtggcatttatcgaaggg 8569071  T
134 tgac 137  Q
    ||||    
8569072 tgac 8569075  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 5298718 - 5298661
Alignment:
52 tggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagac 109  Q
    |||||| |||||||| ||||||||||||  ||  ||||||||||||||||||||||||    
5298718 tggggaatctcttgcgaagaaaattctctcaacgtgaatgggttaagatattggagac 5298661  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 8569095 - 8569167
Alignment:
160 tgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    ||||| ||||||||| ||  |||||||||||||| |||| ||||||||| |||| ||| || |||||||||||    
8569095 tgagattgagttaccataatctcccttccaatctcaagcgttgttttgcctattgttcaatttttcccaaggg 8569167  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 6554516 - 6554556
Alignment:
85 atgaatgggttaagatattggagactgatttgcggcgttta 125  Q
    |||||||| |||||||||||||||||||| || ||||||||    
6554516 atgaatggattaagatattggagactgatatgtggcgttta 6554556  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 6735941 - 6735901
Alignment:
85 atgaatgggttaagatattggagactgatttgcggcgttta 125  Q
    |||||||| |||||||||||||||||||| || ||||||||    
6735941 atgaatggattaagatattggagactgatatgtggcgttta 6735901  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 7587754 - 7587682
Alignment:
160 tgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    ||||| ||||||||| ||  ||||| |||||||| |||| ||||||||| | || ||| ||||||||||||||    
7587754 tgagattgagttaccataatctcccatccaatctaaagcgttgttttgccttttgttcaatatttcccaaggg 7587682  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 7587874 - 7587802
Alignment:
37 tagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagac 109  Q
    ||||| |||||||| ||||||  ||| ||||||||||||| ||  ||  ||||||| ||||||||||||||||    
7587874 tagctgtgaaaacattggggaaactcctgcaaagaaaattttctcaagctgaatggtttaagatattggagac 7587802  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 8471443 - 8471371
Alignment:
160 tgagaatgagttaccttagcctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    ||||| ||||||||| || ||||||||| ||||||||||  |||||||| || |  ||||||||||| |||||    
8471443 tgagattgagttaccataacctcccttctaatctgaagcgctgttttgcctactgctctatatttcctaaggg 8471371  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 6573465 - 6573517
Alignment:
180 ctcccttccaatctgaagcattgttttgcatattattctatatttcccaaggg 232  Q
    |||||||||||||| |||| |||||||||||||| ||| ||||||||||||||    
6573465 ctcccttccaatctaaagcgttgttttgcatattgttccatatttcccaaggg 6573517  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 6573322 - 6573401
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattggagactgat 113  Q
    |||||||  |||||||| |||||| |||||||||||||||||| ||  |   ||||||| ||||||||||||| ||||||    
6573322 ctttagccgtgaaaacattggggaatctcttgcaaagaaaattttctcagggtgaatggtttaagatattggaaactgat 6573401  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 25242184 - 25242256
Alignment:
34 ctttagctctgaaaacactggggattctcttgcaaagaaaattctccgaaaatgaatgggttaagatattgga 106  Q
    |||||||| | ||||||  ||||| |||||||| ||||||||||||  || ||||||||||||||||||||||    
25242184 ctttagctgtaaaaacaacggggaatctcttgcgaagaaaattctctcaacatgaatgggttaagatattgga 25242256  T

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