View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14484_low_81 (Length: 223)
Name: NF14484_low_81
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 27037193 - 27037012
Alignment:
| Q |
1 |
tcatcaaagaataatgtatattgtaaggcatcttttatttcatttagtgactatttgggaccaaaaatattatcatacaaaattaaataaatctgtatta |
100 |
Q |
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| T |
27037193 |
tcatcaaagaataatgtatattgtaaggcatcttttatttcatttagtgactatttgggaccaaaaatattatcatacaaa-------------gtatta |
27037107 |
T |
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| Q |
101 |
atgtgtctatattgttatatatgatgatgactcgtgaatttgaaaagtgcatgtgctgctcacatcatacattaactgacaaattatagtagtat |
195 |
Q |
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| T |
27037106 |
atgtgtctatattgttatatatgatgatgactcgtgaatttgaaaagtgcatgtgctgctcacatcatacactaactgacaaattatagtagtat |
27037012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 5717905 - 5717951
Alignment:
| Q |
177 |
tgacaaattatagtagtatatactgatttaactcaacattgtttgtt |
223 |
Q |
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| T |
5717905 |
tgacaaattatagaagtatataatgattgaactcaacattgtttgtt |
5717951 |
T |
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