View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14484_low_89 (Length: 210)
Name: NF14484_low_89
Description: NF14484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14484_low_89 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 34763225 - 34763416
Alignment:
| Q |
19 |
aacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacattctgctcgccc |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34763225 |
aacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacattctgctcgcct |
34763324 |
T |
|
| Q |
119 |
tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34763325 |
tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctc |
34763416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 34780887 - 34780696
Alignment:
| Q |
19 |
aacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacattctgctcgccc |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34780887 |
aacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacattctgctcgcca |
34780788 |
T |
|
| Q |
119 |
tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34780787 |
tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctc |
34780696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 34755249 - 34755440
Alignment:
| Q |
19 |
aacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacattctgctcgccc |
118 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
34755249 |
aacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacactctgctcgccc |
34755348 |
T |
|
| Q |
119 |
tctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctc |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755349 |
tctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaatctc |
34755440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University