View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14485_high_1 (Length: 426)
Name: NF14485_high_1
Description: NF14485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14485_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 7502414 - 7502236
Alignment:
| Q |
18 |
ccccaactcaccccaaccactcggcctaaacccctctcccatctccctctttatttttccttcccacccctgataacacatcaaacatattgnnnnnnnc |
117 |
Q |
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| T |
7502414 |
ccccaactcactccaaacactcggcctaaacccctctctcatctccctctttatttttccttcccacccctgataacacatcaaacatattgtttttgtc |
7502315 |
T |
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| Q |
118 |
ccctttaaaattcaaacccaccaccttatctatacctcgaagctcgaacatcctctaacttagccttatcactgccatgaagaacc |
203 |
Q |
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| T |
7502314 |
ccctttaaaattcaaacccaccaccttacctatac-------ctcgaacatcctctgacttagccttatcactaccatgaagaacc |
7502236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 298 - 414
Target Start/End: Complemental strand, 7502127 - 7502011
Alignment:
| Q |
298 |
cttcaaacgttgagcacaatgatgcaagtaacccccacctttcttctttgtaactctacgtgcagcagaagtagattttcttgtatcatttgatttaaac |
397 |
Q |
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| T |
7502127 |
cttcaaacgttgagcacaatgatgcaaataacccccacccttcttctttgtaactctacgtgcagcagaagtagattttcttgtatcatttgatttaatc |
7502028 |
T |
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| Q |
398 |
ggaattgcatctcctga |
414 |
Q |
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| T |
7502027 |
ggaattgcatctcctga |
7502011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 21582385 - 21582451
Alignment:
| Q |
42 |
cctaaacccctctcccatctccctctttatttttccttcccacccctgataacacatcaaacatatt |
108 |
Q |
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| T |
21582385 |
cctaaacccctctcccatcaccctctttataatttcttcccacccttgacaacacatcaaacatatt |
21582451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 21582655 - 21582772
Alignment:
| Q |
237 |
tagtcttacgcaaagcacggagcacttcctttcgatctgcgtcagaaaatcacgcaatatgcttcaaacgttgagcacaatgatgcaagtaacccccacc |
336 |
Q |
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| T |
21582655 |
tagtcttacgtaaagcgcgaagcacttcctttctatcagcgtcagggagacgcgcaatatgtttcaaccgacgggcacagtgacgcaagtaacccccacc |
21582754 |
T |
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| Q |
337 |
tttcttctttgtaactct |
354 |
Q |
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| T |
21582755 |
cttcttgtttgaaactct |
21582772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 13154303 - 13154250
Alignment:
| Q |
49 |
ccctctcccatctccctctttatttttccttcccacccctgataacacatcaaa |
102 |
Q |
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| T |
13154303 |
ccctttcccatctccctctttattttttcttcccacccctgacaacacatcaaa |
13154250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 43770340 - 43770292
Alignment:
| Q |
60 |
ctccctctttatttttccttcccacccctgataacacatcaaacatatt |
108 |
Q |
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| T |
43770340 |
ctccctctgaattttttcttcccacccatgacaacacatcaaacatatt |
43770292 |
T |
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