View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14485_high_2 (Length: 423)
Name: NF14485_high_2
Description: NF14485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14485_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 8764656 - 8764244
Alignment:
| Q |
1 |
tttgctctctccatagcaatttcaagtgaaactttgaaaaaatctgatttattttttatggtttgattgaaagcattattggttaaataatactcacatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8764656 |
tttgctctctccatagcaatttcaagtgaaactttgaaaaaatctgatttactttttatggtttgattgaaagcattattggttaaataatactcacatg |
8764557 |
T |
|
| Q |
101 |
gttgaggataaggggtttggctacaccatgattttatggaacttaatgagtaaccataaacaatagtggagaaaagaaatggaaatattaaaagagttgt |
200 |
Q |
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| T |
8764556 |
gttgaggataaggggtttggctacaccatgattttatggaacttaatgagtaaccataaacaatagtggagaaaagaaatggaaatattaaaagagttgt |
8764457 |
T |
|
| Q |
201 |
taccaaaggaaatgaagccat----tgaaaaattattttagggtttggtttgatgagaaatttagagaagggtttatgaggttttggtttgattatgagt |
296 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8764456 |
taccaaaggaaatgaagccattgaatgaaaaatgattttagggtttggtttgatgagaaatttagagaagggtttatgaggttttggtttgattatgagt |
8764357 |
T |
|
| Q |
297 |
gaggtttatgtccttgattttagtgcctttatatagag-gnnnnnnngtggtggttaacatgtaaactatttgagactgctcaccatgtcatacttttcc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8764356 |
gaggtttatgtccttgattttagtgcctttatatagagaaaaaaaaagtggtggttaaaatgtaaactatttgagactgctcaccatgtcatacttttcc |
8764257 |
T |
|
| Q |
396 |
aacttagcctatg |
408 |
Q |
| |
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| T |
8764256 |
aacttagcctatg |
8764244 |
T |
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