View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14485_low_4 (Length: 338)
Name: NF14485_low_4
Description: NF14485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14485_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 318
Target Start/End: Complemental strand, 19769045 - 19768732
Alignment:
| Q |
5 |
cagtatgatcatgtcatacacaatttgagtaagcatattttgtccctcacttactcgacctgctaaagagcttcaagtagacctgctaatgttatagttt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19769045 |
cagtatgatcatgtcatacacaatttgagtaagcatattttgtcactcacttactcgacctgctaaagagcttcaagtagacctgctaatgttatagttt |
19768946 |
T |
|
| Q |
105 |
cttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct-caaacaaaat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
19768945 |
cttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagctaaaaaaaaaat |
19768846 |
T |
|
| Q |
204 |
cagcttctcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattcattgacggataggttccacaacgataatggcta |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768845 |
cagcttctcaaatttctccttctcagtttgcacatgatttaaggttcctct-ccctgcctcaaattcattgacggataggttccacaacgataatggcta |
19768747 |
T |
|
| Q |
304 |
aacaacatgcaccat |
318 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19768746 |
aacaacatgcaccat |
19768732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 29199302 - 29199150
Alignment:
| Q |
94 |
tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct |
193 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
|
|
| T |
29199302 |
tgttctagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaatt |
29199203 |
T |
|
| Q |
194 |
caaacaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaag |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29199202 |
caaacaaaatcagcttctcaaatttctccttctcattttgcacatgatttaag |
29199150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 32014421 - 32014495
Alignment:
| Q |
11 |
gatcatgtcatacacaatttgagtaagcatattttgtccctcacttactcgacctgctaaagagcttcaagtaga |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32014421 |
gatcatgtcatacacaatttgagtaagcatattttgtcactcacttactcgacctgctaaaaagcttcaagtaga |
32014495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 25901171 - 25901225
Alignment:
| Q |
99 |
tagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
153 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25901171 |
tagtttcttctatggcaaaatagatgagaaagaaacaaataaaagtggaagaaga |
25901225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 5478268 - 5478209
Alignment:
| Q |
211 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
270 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
5478268 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
5478209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 50227374 - 50227416
Alignment:
| Q |
130 |
gaaacaaataaaagtggaagaagaaaatttacccataagaacc |
172 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
50227374 |
gaaacaaataaaagtgaaagaagaaactttacccataagaacc |
50227416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 2685044 - 2685103
Alignment:
| Q |
211 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
270 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
2685044 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
2685103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 45008469 - 45008528
Alignment:
| Q |
211 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
270 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
45008469 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
45008528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University