View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14485_low_5 (Length: 332)
Name: NF14485_low_5
Description: NF14485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14485_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 12984777 - 12984466
Alignment:
| Q |
14 |
cataggttgagtacatttcaacactactactgtagtctagtttaggaaaacttactagtactatatgtaaagattctgtgtcagttttatctggttaaat |
113 |
Q |
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| T |
12984777 |
cataggttgagtacatttcaacactacttctatagtctagtttaggaaaacttactagtactatatgtaaagattctgtgtcagttttatctggttaaat |
12984678 |
T |
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| Q |
114 |
aatggaattaattatttggtggtaaaccataattggctccccaaaagcttcttcacattgagatgatactcgtactatgttaagatgcttatctttcaag |
213 |
Q |
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| T |
12984677 |
aatggaattaattatttggtggtaaaccataattggctccccaaaagcttcttcacattgagatgatactagtactatgttaagatgcttatctttc--- |
12984581 |
T |
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| Q |
214 |
tttgaatcacccttattggttcaagtggaattaattattcagttcaagaaaacttttatgtcnnnnnnngatgaagatatatggccacatcatgccagat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
12984580 |
----aatcacccttattggttcaagtggaattaattattcagttcaagaaaacttttatgtctttttttgatgaagatatatggccacatcatgtcagat |
12984485 |
T |
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| Q |
314 |
aattgttgcttcaccattt |
332 |
Q |
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||||||||||||||||||| |
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| T |
12984484 |
aattgttgcttcaccattt |
12984466 |
T |
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