View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14485_low_6 (Length: 300)
Name: NF14485_low_6
Description: NF14485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14485_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 8764926 - 8764657
Alignment:
| Q |
20 |
ttacttaacaattttgttacattattagacaacaaaggtaagacatagtttgtgacaccaaggtcataaaaaccatttttacatgtttcaagatttgtta |
119 |
Q |
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| T |
8764926 |
ttacttaacaactttgttacattattagacaacaaaggtaagacatagtttgtgacaccaaggtcataaaaaccatttttacatgtttcaagatttgtta |
8764827 |
T |
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| Q |
120 |
aagctgtactaagccatgtttgggattcatattgtgtacactttgtgtattttgtttggctaagcttttgaacagtgaaatcatagagttcaagacaatc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
8764826 |
aagctgtactaagccatgtttgggattcatattgtgtacactttgtgtattttgtttggctaagcttttggactgtgaaatcatagagttcaagacaatc |
8764727 |
T |
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| Q |
220 |
tgcccaagcagctttttcttgtgggctacggcactttggaccaactgcatgtgtattttcttcacccttt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8764726 |
tgcccaagcagctttttcttgtgggctacggcactttggaccaactgcatgtgtattttcttcacccttt |
8764657 |
T |
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