View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14486_high_1 (Length: 497)
Name: NF14486_high_1
Description: NF14486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14486_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 31875896 - 31876376
Alignment:
| Q |
1 |
gcgcaaaaatgtatgatgaatattcatactttcttttttgttttaaactgaattggccggatgaaattgatatactatagtatatttaacgaggactata |
100 |
Q |
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| T |
31875896 |
gcgcaaaaatgtatgatgaatattcatactttcttttttgttttaaactgaattggccggatgaaattgatatactatagtatatttaacgaggactata |
31875995 |
T |
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| Q |
101 |
catcacccttcataattattaattggtttaggctcgattcaaaaatctaaatatcggaagaaggaaaggaatcaaacttattgtaatcaattttgaaaaa |
200 |
Q |
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| T |
31875996 |
catcacccttcataattattaattggtttaggctcgattcaaaaatctaaat--cggaagaaggaaaggaatcaaacttattgtaatcaagtttgaaaaa |
31876093 |
T |
|
| Q |
201 |
tatatatgatgcttactataagtttggcatatacaatctttccaattctagctatagcatcgcttattattagttaaccttaaccataaccatagagaaa |
300 |
Q |
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| T |
31876094 |
tatatatgatgcttactataagtttggcatatacaatctttccaattctagctatagcatcgcttattattagttaaccttaaccataaccatagagaaa |
31876193 |
T |
|
| Q |
301 |
agtaccttgatctaaacatcacataaaatctccaagcaataccttcttgaacatggaagaataactccctcttgatcttacattaccaaaacacacacta |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31876194 |
agtaccatgatctaaacatcacataaaatctccaagcaataccttcttgaacatggatgaataactccctcttgatcttacattaccaaaacacacacta |
31876293 |
T |
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| Q |
401 |
gagctagtaacatcgtaaagatcttcattttcacctttcctcgagtgtatcatcggagaagatggcactgaatatgatgttgg |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31876294 |
gagctagtaacatcgtaaagatcttcattttcacctttcctcgagtgtatcatcggagaagatggcactgaatatgatgttgg |
31876376 |
T |
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