View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14486_low_2 (Length: 368)
Name: NF14486_low_2
Description: NF14486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14486_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 2618624 - 2618307
Alignment:
| Q |
18 |
atctttcatatttttgtttttctaataatgttagtttctgttttctataatgataaatagnnnnnnnnnnctagtctaatgcaatttacagctagaaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
2618624 |
atctttcatatttttgtttttctaataatgttagtttctgttttctataatgataaatagaaaaaa----ctagcctaatgcaatttacagctaaaaaca |
2618529 |
T |
|
| Q |
118 |
aagctaacaacnnnnnnnccttttgtaatgttatattttgttttttgttatgaattagattaaatcagatcttgtagaattgttgaggtacatgacaaca |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618528 |
aagctaacaacaaaaaaaccttttgtaatgttatattttgttttttgttatgaattagattaaatcagatcttgtagaattgttgaggtacatgacaaca |
2618429 |
T |
|
| Q |
218 |
cacaatgtacgaggtatgaagggggacctatgcattcaatttgaagataactcagaaaaaacaaaggaaatattattaattataaaggtaa----atagt |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
2618428 |
cacaatgtacgaggt-----------------cattcaatttgaagataactcagaaaaaacaaaggaaatatt----attataaaggtaaatatatagt |
2618350 |
T |
|
| Q |
314 |
tgtgaaatcaaagatttaagaaaagaatcgatgtgaacgagga |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2618349 |
tgtgaaatcaaagatttaagaaaagaatcgatgtgaacgagga |
2618307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University