View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14486_low_3 (Length: 363)
Name: NF14486_low_3
Description: NF14486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14486_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 30730424 - 30730782
Alignment:
| Q |
1 |
tctatatgggagagactttgttcctctattttggaagcaacgcctaatgatatgcttaggggctgcaaagggatttttatatcttcacaccggagctaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
30730424 |
tctatatgggagagactttgttcctctatcttggaagcaacgcctagcgatatgcttaggggctgcaaagggacttttatatcttcacactggagctaaa |
30730523 |
T |
|
| Q |
101 |
caaagcataattcaccatgacgtgaagacaacaaacattctcttggacaaaaagcttgtgccaaaagttgctgattttggcatatcgaaaaagggtccta |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30730524 |
caaagcataattcaccgtgacgtgaagacaacaaacattctcttggacaaaaagattgtgccaaaagtttctgattttggcatatcgaaaaagggtccta |
30730623 |
T |
|
| Q |
201 |
ttcttgataagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggacta-------aactaagaaatcagatgt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
30730624 |
ttcttgataagagtcacgttacaactaatgtaaagggtagttttggctaagttgatccagaatattttaggactaaatttctaactaagaaatcagatgt |
30730723 |
T |
|
| Q |
294 |
tttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctgtagatgatg |
352 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30730724 |
tttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatg |
30730782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 14671396 - 14671038
Alignment:
| Q |
1 |
tctatatgggagagactttgttcctctattttggaagcaacgcctaatgatatgcttaggggctgcaaagggatttttatatcttcacaccggagctaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
14671396 |
tctatatgggagagactttgttcctctatcttggaagcaacgcctaatgatatgcttaggggctgcaaagggacttttatatcttcacactggagctaaa |
14671297 |
T |
|
| Q |
101 |
caaagcataattcaccatgacgtgaagacaacaaacattctcttggacaaaaagcttgtgccaaaagttgctgattttggcatatcgaaaaagggtccta |
200 |
Q |
| |
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||||||||||||||| |||| | |||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14671296 |
gaaagcataattcaccgtgacataaagacaacaaacattctcttggacgaaaatcttgtaccaaaagttgctgattttggcatatcgaaaaagggtccta |
14671197 |
T |
|
| Q |
201 |
ttcttgataagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggacta-------aactaagaaatcagatgt |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14671196 |
ttcttgataagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggactaagtttctaactaagaaatcagatgt |
14671097 |
T |
|
| Q |
294 |
tttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctgtagatgatg |
352 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14671096 |
tttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatg |
14671038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 14684918 - 14685275
Alignment:
| Q |
1 |
tctatatgggagagactttgttcctctattttggaagcaacgcctaatgatatgcttaggggctgcaaagggatttttatatcttcacaccggagctaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| |
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| T |
14684918 |
tctatatgggagagactttgttcctctatcttggaagcaacgcctaatgatatgcttaggggc-gcaaagggacttttatatcttcacactggagctaaa |
14685016 |
T |
|
| Q |
101 |
caaagcataattcaccatgacgtgaagacaacaaacattctcttggacaaaaagcttgtgccaaaagttgctgattttggcatatcgaaaaagggtccta |
200 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14685017 |
caaagcataattcaccgtgatgtgaagacagcaaacattctcttggacgaaaatcttgtgccaaaagttgctgattttggcatatcgaaaaagggtccaa |
14685116 |
T |
|
| Q |
201 |
ttcttgataagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggacta-------aactaagaaatcagatgt |
293 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14685117 |
ttcttgataagagtcacgttacaacgaatgtaaagggtagttttggctatgttgatcctgaatattttaggactacatttctaactaagaaatcagatgt |
14685216 |
T |
|
| Q |
294 |
tttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctgtagatgatg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14685217 |
tttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatg |
14685275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 14704889 - 14704965
Alignment:
| Q |
276 |
aactaagaaatcagatgttttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctgtagatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14704889 |
aactaagaaatcagatgttttctcttatggagtggtgttgattgaagttatatgtggaaaacctgctttagatgatg |
14704965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14676774 - 14676729
Alignment:
| Q |
1 |
tctatatgggagagactttgttcctctattttggaagcaacgccta |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14676774 |
tctatatgggagagactttgttcctctatcttggaagcaacgccta |
14676729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 24058629 - 24058987
Alignment:
| Q |
1 |
tctatatgggagagactttgttcctctattttggaagcaacgcctaatgatatgcttaggggctgcaaagggatttttatatcttcacaccggagctaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||| || |||| || | |||||||| || ||| || | ||||||||||| ||||||||| |
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| T |
24058629 |
tctatatgggagagactttgttccactgtcttggaagcaacgtcttgggataggcatcggggctgcgaaaggacttctttatcttcacactggagctaaa |
24058728 |
T |
|
| Q |
101 |
caaagcataattcaccatgacgtgaagacaacaaacattctcttggacaaaaagcttgtgccaaaagttgctgattttggcatatcgaaaaagggtccta |
200 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24058729 |
caaagcataattcaccgtgatgtgaagacaacaaacattctcttggatgaaaaccttgtgccaaaagttgctgattttggcatatcaaaaaagggtcctc |
24058828 |
T |
|
| Q |
201 |
ttcttgataagagtcacgttacaactaatgtaaagggtagttttggctatgttgatcctgaatattttaggactaa-------actaagaaatcagatgt |
293 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||||| || |||||| ||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
24058829 |
ttcttgataagagccacgttacaacccatgtaaagggtagcttcggctatcttgatccagaatattttaggactaaatttcttactaagaaatcagatgt |
24058928 |
T |
|
| Q |
294 |
tttctcttttggagtggtgttgattgaagttatatgtggaaaacctgctgtagatgatg |
352 |
Q |
| |
|
|| ||| || || ||||||||| |||||||||||||||| || |||||| ||||||||| |
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|
| T |
24058929 |
ttactcgttcggggtggtgttgcttgaagttatatgtgggaagcctgctctagatgatg |
24058987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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