View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14486_low_4 (Length: 301)
Name: NF14486_low_4
Description: NF14486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14486_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 14671373 - 14671652
Alignment:
| Q |
6 |
ggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttccgagtcttcgttacaacaacctacaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14671373 |
ggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttctgagtcttcgttacaacaacctacaa |
14671472 |
T |
|
| Q |
106 |
gagtgacaaggtttgaatgacgaagaccagacaacaactcaatctcgttgtggaattcaccgagaccttgtctagattcaggatttgctactttgatagc |
205 |
Q |
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| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14671473 |
gtgagacaaggtttgaatgactaagaccagacaacaactcaatctcgttgtggaattcatcgagaccttgtctagattcaggatttgctactttgatagc |
14671572 |
T |
|
| Q |
206 |
tactacttctccattttcaagcgttcctttatacactttgccaaatcttccttttccaattattagctcagcgtcaaaac |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
14671573 |
tactacttctccattttcaagcgttcctttatacacttttccaaatcctccttttccaattattagctcagcgtcaaaac |
14671652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 14676751 - 14677030
Alignment:
| Q |
6 |
ggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttccgagtcttcgttacaacaacctacaa |
105 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14676751 |
ggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttctgagtcttcgttacaacaacctacaa |
14676850 |
T |
|
| Q |
106 |
gagtgacaaggtttgaatgacgaagaccagacaacaactcaatctcgttgtggaattcaccgagaccttgtctagattcaggatttgctactttgatagc |
205 |
Q |
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| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14676851 |
gtgagacaaggtttgaatgactaagaccagacaacaactcaatctcgttgtggaattcatcgagaccttgtctagattcaggatttgctactttgatagc |
14676950 |
T |
|
| Q |
206 |
tactacttctccattttcaagcgttcctttatacactttgccaaatcttccttttccaattattagctcagcgtcaaaac |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
14676951 |
tactacttctccattttcaagcgttcctttatacacttttccaaatcctccttttccaattattagctcagcgtcaaaac |
14677030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 14684941 - 14684662
Alignment:
| Q |
6 |
ggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttccgagtcttcgttacaacaacctacaa |
105 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14684941 |
ggaacaaagtctctcccatatagataactgctgagagatccatttgccatgtaattgtacacaagaatcagttccgagtcttggttacaacaacctacaa |
14684842 |
T |
|
| Q |
106 |
gagtgacaaggtttgaatgacgaagaccagacaacaactcaatctcgttgtggaattcaccgagaccttgtctagattcaggatttgctactttgatagc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14684841 |
gagtgacaaggtttgaatgacgaagaccagacaaaaactcaatctcgttgtggaattcaccgagaccttgtctagattcaggatttgctactttgatagc |
14684742 |
T |
|
| Q |
206 |
tactacttctccattttcaagcgttcctttatacactttgccaaatcttccttttccaattattagctcagcgtcaaaac |
285 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |
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|
| T |
14684741 |
tactacttttccattttcaagtgtttctttatacactttgccaaatcctccttttccaattattagctcggtgtcaaaac |
14684662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 30730447 - 30730168
Alignment:
| Q |
6 |
ggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttccgagtcttcgttacaacaacctacaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
30730447 |
ggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttctgagtcttcgttataacaacctacaa |
30730348 |
T |
|
| Q |
106 |
gagtgacaaggtttgaatgacgaagaccagacaacaactcaatctcgttgtggaattcaccgagaccttgtctagattcaggatttgctactttgatagc |
205 |
Q |
| |
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| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30730347 |
gtgagacaaggtttgaatgactaagaccagacaacaactcaatctcgttttggaattcaccgagaccttgtctagattcaggatttgctactttgatagc |
30730248 |
T |
|
| Q |
206 |
tactacttctccattttcaagcgttcctttatacactttgccaaatcttccttttccaattattagctcagcgtcaaaac |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
30730247 |
tactacttctccattttcaagcgttcctttgtacactttgccaaatccttcttttccaattattagctcagcgtcaaaac |
30730168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 284
Target Start/End: Complemental strand, 24058653 - 24058374
Alignment:
| Q |
5 |
tggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttccgagtcttcgttacaacaacctaca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||| | |
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| T |
24058653 |
tggaacaaagtctctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttctgagtcttcattacaacaaccaatg |
24058554 |
T |
|
| Q |
105 |
agagtgacaaggtttgaatgacgaagaccagacaacaactcaatctcgttgtggaattcaccgagaccttgtctagattcaggatttgctactttgatag |
204 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24058553 |
agagagacaagatttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcaggatttgctactttgatgg |
24058454 |
T |
|
| Q |
205 |
ctactacttctccattttcaagcgttcctttatacactttgccaaatcttccttttccaattattagctcagcgtcaaaa |
284 |
Q |
| |
|
|||||| || |||||||| || ||||||||||||| || ||||||| |||| |||||| | |||| |||| |||||| |
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| T |
24058453 |
ctactattttcccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcacagcatcaaaa |
24058374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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