View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14486_low_5 (Length: 288)

Name: NF14486_low_5
Description: NF14486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14486_low_5
NF14486_low_5
[»] chr4 (3 HSPs)
chr4 (138-280)||(22463057-22463201)
chr4 (14-71)||(17404767-17404824)
chr4 (15-73)||(41813488-41813546)
[»] chr7 (2 HSPs)
chr7 (14-80)||(11646704-11646770)
chr7 (14-80)||(13764928-13764994)
[»] scaffold0318 (1 HSPs)
scaffold0318 (14-94)||(6511-6589)
[»] scaffold0475 (1 HSPs)
scaffold0475 (15-71)||(6353-6409)
[»] chr6 (5 HSPs)
chr6 (15-71)||(4659056-4659112)
chr6 (13-77)||(8976996-8977060)
chr6 (11-79)||(19121443-19121511)
chr6 (14-80)||(3066428-3066494)
chr6 (14-94)||(30906235-30906313)
[»] chr3 (4 HSPs)
chr3 (15-94)||(13867399-13867476)
chr3 (14-92)||(3848152-3848228)
chr3 (14-94)||(47761249-47761327)
chr3 (15-80)||(52134623-52134688)
[»] chr1 (3 HSPs)
chr1 (15-73)||(31768413-31768471)
chr1 (14-73)||(7604858-7604917)
chr1 (15-80)||(23597858-23597923)
[»] chr2 (1 HSPs)
chr2 (15-80)||(2040163-2040228)
[»] chr8 (2 HSPs)
chr8 (15-94)||(1849846-1849923)
chr8 (14-80)||(34345947-34346013)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-79)||(33478-33542)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 138 - 280
Target Start/End: Original strand, 22463057 - 22463201
Alignment:
Q  138 tttagactatatgaaaaacaaaaacaaagataactattgaaatataaggatatagcatgcaaacaaa--cttggtgggaaaaatgaaagattagtgtgtt 235  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  22463057 tttagactatacgaaaaacaaaaacaaatataactattgaaatataaggatatagcatgcaaacaaaaacttggtgggaaaaatgaaagattagtgtgtt 22463156  T
Q  236 tgtatgcagaagacatcaaaagaatcaagaatgaacaacgacaat 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  22463157 tgtatgcagaagacatcaaaagaatcaagaatgaacaacgacaat 22463201  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 17404767 - 17404824
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatata 71  Q
    |||||||||||||||||||||||||| | || |||||| |||| ||||||||||||||    
T  17404767 tactagaacttttacccgtgctaccgctcgggtcataaacaatggagaaactaatata 17404824  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 41813546 - 41813488
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatatt 73  Q
    |||||||||||||||||||||||||   ||||||||| |||| ||||| ||||||||||    
T  41813546 actagaacttttacccgtgctaccgcccggatcataaacaatggagaagctaatatatt 41813488  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 11646704 - 11646770
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatat 80  Q
    |||||||||||||||||||||||||| | || |||||| |||| |||||||||||||||||||||||    
T  11646704 tactagaacttttacccgtgctaccgctcgggtcataaacaatggagaaactaatatattgcaatat 11646770  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 13764994 - 13764928
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatat 80  Q
    ||||||||||||||||||||||||||   |  |||||| |||| || || |||||||||||||||||    
T  13764994 tactagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagctaatatattgcaatat 13764928  T

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Target: scaffold0318 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 6589 - 6511
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatataagatccattacat 94  Q
    ||||||||||||||||||||||| ||   || ||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  6589 tactagaacttttacccgtgctatcgcccgggtcataaccaatggagaaactaatatattgcaatat--gatccattacat 6511  T

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Target: scaffold0475 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 6353 - 6409
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatata 71  Q
    ||||||||||||||||||||||||||  ||||||||| |||| ||||||||||||||    
T  6353 actagaacttttacccgtgctaccgaccggatcataaacaatggagaaactaatata 6409  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 4659056 - 4659112
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatata 71  Q
    ||||||||||||||||||||||||||  ||||||||| |||| ||||||||||||||    
T  4659056 actagaacttttacccgtgctaccgaccggatcataaacaatggagaaactaatata 4659112  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 8977060 - 8976996
Alignment:
Q  13 atactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaa 77  Q
    |||||||||||||||||||||||||||   || |||||| |||| || || ||||||||||||||    
T  8977060 atactagaacttttacccgtgctaccgcccgggtcataaacaatggaaaagctaatatattgcaa 8976996  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 19121511 - 19121443
Alignment:
Q  11 ttatactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaata 79  Q
    |||||||||||||||||||||||||||||   || |||||  |||| |||||  |||||||||||||||    
T  19121511 ttatactagaacttttacccgtgctaccgtccgggtcatagacaatggagaagttaatatattgcaata 19121443  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 3066494 - 3066428
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatat 80  Q
    ||||||||||||||||||||||||||  ||| |||||| |||| |||||  |||||| ||| |||||    
T  3066494 tactagaacttttacccgtgctaccgcctgggtcataaacaatggagaaggtaatatgttgtaatat 3066428  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 30906235 - 30906313
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatataagatccattacat 94  Q
    ||||||||||||||||||||||||||   || |||||| |||  |||||| |||||||||  |||||  ||||||||||||    
T  30906235 tactagaacttttacccgtgctaccgcccgggtcataaacaacggagaaattaatatattataatat--gatccattacat 30906313  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 13867399 - 13867476
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatataagatccattacat 94  Q
    |||||||||||||| |||||||||| | || |||||| |||| ||||| |||||||||||||  ||||||||||||||||    
T  13867399 actagaacttttactcgtgctaccgctcgggtcataaacaatggagaagctaatatattgca--ataagatccattacat 13867476  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 3848228 - 3848152
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatataagatccattac 92  Q
    ||||||||||||||||||||||||||   || |||||| |||  |||||||||||||| ||||  ||||||||||||||    
T  3848228 tactagaacttttacccgtgctaccgtccgggtcataaacaaaggagaaactaatatagtgca--ataagatccattac 3848152  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 47761249 - 47761327
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatataagatccattacat 94  Q
    ||||| |||||||| ||||||||||| | || ||||||  ||| |||||  ||||||||||||  ||||||||||||||||    
T  47761249 tactataacttttatccgtgctaccgttcgggtcataaataatggagaagttaatatattgca--ataagatccattacat 47761327  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 52134688 - 52134623
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatat 80  Q
    |||||| ||||||||| ||||||||   || |||||| |||| ||||| |||||||||||||||||    
T  52134688 actagatcttttacccatgctaccgcccgggtcataaacaatggagaagctaatatattgcaatat 52134623  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 31768413 - 31768471
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatatt 73  Q
    |||||||||||||||||||||||||   ||||||||| |||| ||||||||||||||||    
T  31768413 actagaacttttacccgtgctaccgcccggatcataaacaatggagaaactaatatatt 31768471  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 7604858 - 7604917
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatatt 73  Q
    ||||||||||||||||||||||||||   ||||||||| |||| ||||| ||||||||||    
T  7604858 tactagaacttttacccgtgctaccgcccggatcataaacaatggagaagctaatatatt 7604917  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 23597858 - 23597923
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatat 80  Q
    |||| ||||||||||||||| ||||   || |||||| |||| |||||||||||||||||||||||    
T  23597858 actaaaacttttacccgtgccaccgtccggctcataaacaatggagaaactaatatattgcaatat 23597923  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 2040163 - 2040228
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatat 80  Q
    |||||||||||||||||||||||||   || ||||||  ||| |||||| ||||||||||||||||    
T  2040163 actagaacttttacccgtgctaccgcccgggtcataaataatggagaaattaatatattgcaatat 2040228  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 1849846 - 1849923
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatataagatccattacat 94  Q
    |||||||| |||||||||||||||    || |||||| |||| || ||||||||||||||||||||  ||||||||||||    
T  1849846 actagaacatttacccgtgctaccacccgggtcataaacaatggataaactaatatattgcaatat--gatccattacat 1849923  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 34346013 - 34345947
Alignment:
Q  14 tactagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaatat 80  Q
    |||||||||||||| || ||||||||   ||||||||| ||||  ||||||||||| ||||||||||    
T  34346013 tactagaacttttatccttgctaccgtccggatcataaacaatgaagaaactaatacattgcaatat 34345947  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 33478 - 33542
Alignment:
Q  15 actagaacttttacccgtgctaccgattggatcataaccaattgagaaactaatatattgcaata 79  Q
    |||||||||||||||||||||||||   |  |||||| |||| || || ||||||||||||||||    
T  33478 actagaacttttacccgtgctaccgcccgagtcataaacaatggaaaagctaatatattgcaata 33542  T

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