View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14486_low_6 (Length: 269)

Name: NF14486_low_6
Description: NF14486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14486_low_6
NF14486_low_6
[»] chr7 (21 HSPs)
chr7 (89-177)||(37925935-37926023)
chr7 (89-173)||(39646567-39646651)
chr7 (89-173)||(28074165-28074249)
chr7 (89-173)||(33519146-33519230)
chr7 (89-173)||(35422062-35422146)
chr7 (89-173)||(48881620-48881704)
chr7 (90-173)||(21857445-21857528)
chr7 (99-173)||(16833793-16833867)
chr7 (89-171)||(36267615-36267697)
chr7 (89-173)||(48015305-48015389)
chr7 (89-173)||(37620872-37620956)
chr7 (101-173)||(48013600-48013673)
chr7 (97-173)||(3143578-3143658)
chr7 (119-173)||(12670928-12670982)
chr7 (89-167)||(2087801-2087883)
chr7 (101-170)||(3215934-3216003)
chr7 (89-168)||(31364107-31364183)
chr7 (97-140)||(8122279-8122322)
chr7 (89-162)||(30592315-30592388)
chr7 (40-72)||(17852884-17852916)
chr7 (33-69)||(42306542-42306578)
[»] chr4 (22 HSPs)
chr4 (89-177)||(29993833-29993921)
chr4 (89-170)||(22186820-22186901)
chr4 (89-172)||(55080678-55080761)
chr4 (96-173)||(47846124-47846201)
chr4 (89-173)||(7977558-7977642)
chr4 (89-173)||(37761562-37761646)
chr4 (89-173)||(43961508-43961592)
chr4 (89-170)||(54001168-54001246)
chr4 (91-173)||(9030314-9030396)
chr4 (91-173)||(54576391-54576473)
chr4 (89-168)||(11089619-11089698)
chr4 (89-170)||(4437487-4437568)
chr4 (89-173)||(14539370-14539454)
chr4 (89-165)||(51329901-51329977)
chr4 (89-173)||(34995149-34995231)
chr4 (90-154)||(5825013-5825077)
chr4 (101-173)||(17182557-17182631)
chr4 (113-173)||(56135847-56135904)
chr4 (100-153)||(51075215-51075268)
chr4 (89-132)||(35543369-35543412)
chr4 (89-173)||(21694952-21695035)
chr4 (89-161)||(55510280-55510351)
[»] chr8 (17 HSPs)
chr8 (89-173)||(16024252-16024336)
chr8 (89-173)||(12022205-12022289)
chr8 (89-173)||(40633051-40633135)
chr8 (89-170)||(8815203-8815284)
chr8 (89-173)||(43732785-43732869)
chr8 (89-170)||(20472754-20472835)
chr8 (89-173)||(30365228-30365312)
chr8 (99-173)||(6453282-6453356)
chr8 (89-171)||(34196409-34196491)
chr8 (89-173)||(9434360-9434445)
chr8 (103-172)||(43826431-43826500)
chr8 (101-173)||(39449402-39449474)
chr8 (89-159)||(29937614-29937684)
chr8 (89-173)||(8671854-8671940)
chr8 (96-173)||(9933339-9933416)
chr8 (119-173)||(24243139-24243193)
chr8 (40-69)||(31543284-31543313)
[»] chr5 (13 HSPs)
chr5 (112-177)||(5688507-5688572)
chr5 (89-173)||(34980908-34980992)
chr5 (89-173)||(40305727-40305811)
chr5 (89-173)||(10043350-10043434)
chr5 (89-173)||(21581045-21581129)
chr5 (89-173)||(33744255-33744339)
chr5 (92-173)||(6382425-6382506)
chr5 (92-173)||(10204674-10204755)
chr5 (97-173)||(8551488-8551564)
chr5 (98-173)||(10043080-10043155)
chr5 (89-157)||(6597852-6597920)
chr5 (89-173)||(12035998-12036081)
chr5 (92-173)||(15986689-15986770)
[»] chr3 (21 HSPs)
chr3 (89-173)||(42772130-42772214)
chr3 (89-173)||(26135895-26135979)
chr3 (89-173)||(34641090-34641172)
chr3 (89-173)||(24253820-24253904)
chr3 (89-169)||(40858667-40858747)
chr3 (89-173)||(42699674-42699758)
chr3 (89-173)||(17474268-17474352)
chr3 (90-173)||(8432322-8432405)
chr3 (89-171)||(36727276-36727358)
chr3 (96-166)||(41414183-41414253)
chr3 (100-173)||(10943687-10943760)
chr3 (89-173)||(48683710-48683795)
chr3 (89-173)||(21090133-21090217)
chr3 (89-173)||(44412459-44412543)
chr3 (89-173)||(18086042-18086127)
chr3 (112-173)||(27197734-27197795)
chr3 (104-173)||(46978525-46978594)
chr3 (89-158)||(55428492-55428561)
chr3 (102-173)||(16884047-16884117)
chr3 (89-140)||(54985755-54985806)
chr3 (40-76)||(34641005-34641041)
[»] chr2 (21 HSPs)
chr2 (89-173)||(15085762-15085846)
chr2 (100-173)||(2381060-2381133)
chr2 (97-173)||(35325367-35325443)
chr2 (89-173)||(45257405-45257489)
chr2 (89-173)||(34187673-34187759)
chr2 (89-173)||(45098267-45098351)
chr2 (100-173)||(1052828-1052901)
chr2 (104-173)||(31928121-31928190)
chr2 (89-170)||(36052149-36052230)
chr2 (89-169)||(8554361-8554441)
chr2 (93-173)||(21502131-21502211)
chr2 (89-173)||(31061457-31061541)
chr2 (89-168)||(3094415-3094494)
chr2 (93-139)||(16713657-16713703)
chr2 (136-177)||(22356059-22356100)
chr2 (104-173)||(33265704-33265773)
chr2 (89-173)||(42296365-42296449)
chr2 (89-165)||(42813726-42813802)
chr2 (89-173)||(9313081-9313169)
chr2 (89-141)||(22356133-22356186)
chr2 (40-72)||(12541773-12541805)
[»] chr6 (13 HSPs)
chr6 (90-171)||(15353463-15353544)
chr6 (94-173)||(4097302-4097381)
chr6 (90-173)||(15323323-15323406)
chr6 (89-167)||(31799025-31799103)
chr6 (89-173)||(9051596-9051680)
chr6 (89-173)||(25468461-25468545)
chr6 (89-173)||(3841183-3841268)
chr6 (101-173)||(26318403-26318475)
chr6 (96-167)||(15373668-15373739)
chr6 (89-165)||(10293354-10293430)
chr6 (89-167)||(34176633-34176711)
chr6 (40-69)||(30487517-30487546)
chr6 (40-72)||(1300632-1300664)
[»] chr1 (17 HSPs)
chr1 (89-173)||(1085552-1085636)
chr1 (89-173)||(33643366-33643450)
chr1 (89-172)||(47071150-47071233)
chr1 (89-173)||(25268362-25268446)
chr1 (89-173)||(40709354-40709438)
chr1 (89-159)||(35512909-35512979)
chr1 (89-173)||(2506637-2506721)
chr1 (101-173)||(35927911-35927982)
chr1 (104-173)||(51303461-51303530)
chr1 (89-173)||(525163-525245)
chr1 (90-173)||(13386982-13387065)
chr1 (90-173)||(20607317-20607397)
chr1 (96-173)||(40287324-40287401)
chr1 (89-173)||(1344646-1344730)
chr1 (114-173)||(17622635-17622694)
chr1 (40-72)||(51303387-51303419)
chr1 (89-165)||(52707751-52707827)
[»] scaffold0007 (1 HSPs)
scaffold0007 (89-170)||(242317-242398)
[»] scaffold0095 (1 HSPs)
scaffold0095 (101-173)||(8245-8317)
[»] scaffold0026 (1 HSPs)
scaffold0026 (95-173)||(1465-1543)
[»] scaffold0012 (2 HSPs)
scaffold0012 (89-173)||(184704-184789)
scaffold0012 (40-72)||(184614-184646)
[»] scaffold0071 (1 HSPs)
scaffold0071 (89-173)||(52983-53067)
[»] scaffold0240 (1 HSPs)
scaffold0240 (100-171)||(17640-17711)
[»] scaffold1414 (1 HSPs)
scaffold1414 (100-173)||(399-473)
[»] scaffold0119 (1 HSPs)
scaffold0119 (89-170)||(37484-37565)
[»] scaffold0006 (1 HSPs)
scaffold0006 (114-162)||(81498-81546)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 89 - 177
Target Start/End: Complemental strand, 37926023 - 37925935
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaatctat 177  Q
    ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37926023 aaattacggacattataaaatgatgtttagaaaattgaattaacaacatgattgatgatgatataatacttcaaaaacacttaatctat 37925935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 39646651 - 39646567
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  39646651 aaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttcaaaaacagttaat 39646567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 28074165 - 28074249
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||||||    
T  28074165 aaattacggacattataaaatgatttttagaaaattgaattaacaacctgataaatgatcatataatacttcaaaaacacttaat 28074249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 33519230 - 33519146
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  33519230 aaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaat 33519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 35422146 - 35422062
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||  || || |||| ||||||||||||||||||||    
T  35422146 aaattacggacattataaaataatttttagaaaattgaattaacaacataataaataatcatatgatacttcaaaaacacttaat 35422062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 48881620 - 48881704
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||  ||||| ||||||| ||||||||| |||||||    
T  48881620 aaattacggacattataaaataattttcagaaaattgaattaacaacatgataaatgattatataatgcttcaaaaatacttaat 48881704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 21857528 - 21857445
Alignment:
Q  90 aattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||||||||  ||||| ||| |||| ||||||||||||||||    
T  21857528 aattacgaacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatacaatatttcaaaaacacttaat 21857445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 16833867 - 16833793
Alignment:
Q  99 cattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||| |||||||||| ||||||||||||||||||||||  ||||| || ||||||||||||||||||||||    
T  16833867 cattataatataatttttataaaattgaattaataacatgataaatgatcatgtaatacttcaaaaacacttaat 16833793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 36267615 - 36267697
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactta 171  Q
    |||||||||| |||||||||| |||||||||||||||||| || || |||||  ||||| |||||||||||||||||||||||    
T  36267615 aaattacggatattataaaatgatttttagaaaattgaatcaacaatatgataaatgatcatataatacttcaaaaacactta 36267697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 48015389 - 48015305
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| ||| |||||||||||||||| |||||||||||||| ||||||||  ||||| |||||||  ||||||||||||||||    
T  48015389 aaattacagactttataaaataatttttggaaaattgaattaacaacatgataaatgatcatataatttttcaaaaacacttaat 48015305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 37620956 - 37620872
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| |||||||||||||| |||||| |||||||||||||  ||||||||  | ||| ||||||||||||||||||| |||||    
T  37620956 aaattatggacattataaaatgatttttggaaaattgaattatcaacatgataaaagattatataatacttcaaaaacatttaat 37620872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 48013673 - 48013600
Alignment:
Q  101 ttataaaataatttttagaaaattgaattaataacatgattgatgatgatat-aatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||||||||||||| ||||||||  ||||| |||| |||  ||||||||||||||||    
T  48013673 ttataaaataatttttagaaaattgaattaacaacatgataaatgatcatatgaatttttcaaaaacacttaat 48013600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 3143658 - 3143578
Alignment:
Q  97 gacattataaaataatttttagaaaattgaattaat----aacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||||||||||||    || |||||  ||||| ||||||||||||||||| |||||||    
T  3143658 gacattataaaataatttttaaaaaattgaattaattaacaaaatgataaatgatcatataatacttcaaaaaaacttaat 3143578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 12670928 - 12670982
Alignment:
Q  119 aaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  12670928 aaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaat 12670982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 2087801 - 2087883
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattga----tgatgatataatacttcaaaaaca 167  Q
    |||||||||| |||||||||||||||||| |||| |||||||| ||||||||  |    |||| |||||||||||||||||||    
T  2087801 aaattacggatattataaaataatttttaaaaaaatgaattaacaacatgataaataattgatcatataatacttcaaaaaca 2087883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 3215934 - 3216003
Alignment:
Q  101 ttataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    ||||||||| ||||||||||||||||||||| || |||||  ||||| ||||||||||||| ||| ||||    
T  3215934 ttataaaatgatttttagaaaattgaattaacaatatgataaatgatcatataatacttcataaatactt 3216003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 31364107 - 31364183
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacac 168  Q
    ||||||||||||||||||||| ||||| |||||||||||| ||  |||| |   ||||| ||||||||||||||||||||    
T  31364107 aaattacggacattataaaatgattttaagaaaattgaatcaacgacataa---atgatcatataatacttcaaaaacac 31364183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 8122322 - 8122279
Alignment:
Q  97 gacattataaaataatttttagaaaattgaattaataacatgat 140  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  8122322 gacattataaaataatttttagaaaattgaattaacaagatgat 8122279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 30592315 - 30592388
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaa 162  Q
    ||||||| |||| |||||||| ||||||| ||||||||| |||| | |||||  || || ||||||||||||||    
T  30592315 aaattacagacactataaaatgatttttaaaaaattgaaataatcatatgataaataatcatataatacttcaa 30592388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 17852884 - 17852916
Alignment:
Q  40 gtgtgtttcgattgagggtttaggaggggaggg 72  Q
    |||||||| ||||||||||||||||||||||||    
T  17852884 gtgtgtttagattgagggtttaggaggggaggg 17852916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 42306578 - 42306542
Alignment:
Q  33 ctttaatgtgtgtttcgattgagggtttaggagggga 69  Q
    |||||| |||||||| |||||||||||||||||||||    
T  42306578 ctttaaagtgtgtttggattgagggtttaggagggga 42306542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 29993833 - 29993921
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaatctat 177  Q
    |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  29993833 aaattacggacactataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatacttcaaaaatacttaatctat 29993921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 22186901 - 22186820
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||||||    
T  22186901 aaattacggacattataaaatgatttttagaaaattgaattaacaacatgataaatgattatataatacttcaaaaacactt 22186820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 55080761 - 55080678
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaa 172  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||||||  ||||| ||| ||||||||||||||||||||    
T  55080761 aaattacgaacattataaaataatttttagaaaatttaattaacaacatgataaatgatcataaaatacttcaaaaacacttaa 55080678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 47846124 - 47846201
Alignment:
Q  96 ggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||  || || |||||||||||||||||||||||||    
T  47846124 ggacattataaaataatttttacaaaattgaattaagaacatgataaataatcatataatacttcaaaaacacttaat 47846201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 7977558 - 7977642
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||| ||||||||||||||| ||| |||||||||||||| ||||||||  ||||| ||||||||||||||||||| |||||    
T  7977558 aaattacgaacattataaaataatattttgaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacaattaat 7977642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 37761646 - 37761562
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| ||||||||| |||| ||||||||||||||||||||| ||||||||  ||||| |||||| ||||||||||||||||||    
T  37761646 aaattatggacattatgaaatgatttttagaaaattgaattaacaacatgataaatgattatataacacttcaaaaacacttaat 37761562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 43961592 - 43961508
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| | |||||||||||| ||||||||||||||||||||  ||||||||  ||||| |||||||||||||||||||||||||    
T  43961592 aaattatgaacattataaaatgatttttagaaaattgaattatcaacatgataaatgatcatataatacttcaaaaacacttaat 43961508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 54001168 - 54001246
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    ||||||||||||||||||||||||||||| ||||||||||   |||||||||  ||||| ||||||||||||||||||||||    
T  54001168 aaattacggacattataaaataatttttaaaaaattgaat---taacatgataaatgatcatataatacttcaaaaacactt 54001246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 9030396 - 9030314
Alignment:
Q  91 attacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||| |||||  ||||| ||||||||||| |||||||||||||    
T  9030396 attacagacattataaaatgatttttagaaaatttaattaataaaatgataaatgattatataatactttaaaaacacttaat 9030314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 54576391 - 54576473
Alignment:
Q  91 attacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||| |||| |||||||||||||||| ||| ||||  ||||| ||||||||||||||||||| |||||    
T  54576391 attacggacattataaaatgatttatagaaaattgaattaacaacgtgataaatgattatataatacttcaaaaacatttaat 54576473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 11089698 - 11089619
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacac 168  Q
    ||||||||||| |||||||||| |||||||||||||||||||| ||||| ||  ||||| ||||| ||||||||||||||    
T  11089698 aaattacggactttataaaatattttttagaaaattgaattaacaacatcataaatgatcatatattacttcaaaaacac 11089619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 4437487 - 4437568
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    |||||| ||| |||||||||| ||||||| ||||||||||||| ||||||||   |||| ||||||||||||||||||||||    
T  4437487 aaattatggatattataaaatgatttttaaaaaattgaattaacaacatgataattgatcatataatacttcaaaaacactt 4437568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 14539454 - 14539370
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||| ||||||||||||  || |||||||||| |||||| ||||| ||  ||||| |||||||||||||||||||||||||    
T  14539454 aaattacgaacattataaaatgtttgttagaaaattaaattaagaacataataaatgatcatataatacttcaaaaacacttaat 14539370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 51329977 - 51329901
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaa 165  Q
    |||||| ||| ||||||||||||||| |||||||||||||||| || |||||  ||||| |||||||||||||||||    
T  51329977 aaattagggatattataaaataatttatagaaaattgaattaacaaaatgataaatgattatataatacttcaaaaa 51329901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 34995231 - 34995149
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| ||||| |||| ||||||||||||||||||||  ||||||||  || ||  ||||||||||||||||||||||||    
T  34995231 aaattacggatattatcaaatgatttttagaaaattgaatta--aacatgataaataatcttataatacttcaaaaacacttaat 34995149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 5825077 - 5825013
Alignment:
Q  90 aattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataa 154  Q
    |||||| ||||||||||||| ||||||||||||||||||||| ||||||||  ||||| ||||||    
T  5825077 aattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataa 5825013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 17182557 - 17182631
Alignment:
Q  101 ttataaaataatttttag--aaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||| |||||| |  ||||||||||||| || |||||  ||||| |||||||||||||||||||||||||    
T  17182557 ttataaaatgattttttgcaaaaattgaattaacaatatgataaatgatcatataatacttcaaaaacacttaat 17182631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 56135904 - 56135847
Alignment:
Q  113 ttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||||||||||   ||||||  ||||| |||||||||||||||||||||||||    
T  56135904 ttttagaaaattgaattaa---catgataaatgatcatataatacttcaaaaacacttaat 56135847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 51075268 - 51075215
Alignment:
Q  100 attataaaataatttttagaaaattgaattaataacatgattgatgatgatata 153  Q
    |||||||||||||||||| ||||||||||||| ||||||||  ||||| |||||    
T  51075268 attataaaataatttttaaaaaattgaattaacaacatgataaatgatcatata 51075215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 35543369 - 35543412
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaat 132  Q
    |||||| | |||||||||||||||||||| ||||||||||||||    
T  35543369 aaattaggaacattataaaataatttttaaaaaattgaattaat 35543412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 21694952 - 21695035
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||| ||||||||  ||||||  |||||||| ||| || |||| | ||||| ||||||||||||||  |||||||||    
T  21694952 aaattacggacactataaaatggtttttaataaattgaaataacaaaatga-taatgatcatataatacttcaatcacacttaat 21695035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 55510351 - 55510280
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttca 161  Q
    |||||||| ||| ||||||||| |||| | ||||||||| ||| ||||||||  ||||| |||||||||||||    
T  55510351 aaattacgaacactataaaata-ttttaaaaaaattgaaataacaacatgatgaatgatcatataatacttca 55510280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 16024336 - 16024252
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  16024336 aaattacggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaat 16024252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 12022205 - 12022289
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||| |||||||||||| ||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  12022205 aaattacgaacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaat 12022289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 40633051 - 40633135
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||  ||||||| ||||||||||||||||    
T  40633051 aaattacggacattataaaataatttttagaaaattgaattaacaacatgataaatgattgtataatatttcaaaaacacttaat 40633135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 8815203 - 8815284
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||||||  ||||| ||||||||||||||||||||||    
T  8815203 aaattacggacattataaaatgatttttagaaaattgaatcaacaacatgataaatgattatataatacttcaaaaacactt 8815284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 43732869 - 43732785
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| |||||| |||||||||||||| || |||||  ||||| |||||||||||||||||||||||||    
T  43732869 aaattacggacattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatacttcaaaaacacttaat 43732785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 20472754 - 20472835
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| || |||||  ||||| ||||||||||||||||||||||    
T  20472754 aaattacagacattataaaataaattttagaaaattgaattaacaatatgatatatgatcatataatacttcaaaaacactt 20472835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 30365312 - 30365228
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| |||||||| |||| ||||||||||||||||||||| ||||||||  ||||| |||||| ||||||||||||||||||    
T  30365312 aaattacagacattatgaaatgatttttagaaaattgaattaacaacatgataaatgattatataacacttcaaaaacacttaat 30365228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 6453356 - 6453282
Alignment:
Q  99 cattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||| ||||||||||||||||||||||||||||||   | || |||||||||||||||||||||||||    
T  6453356 cattataaaatgatttttagaaaattgaattaataacatgataagtaatcatataatacttcaaaaacacttaat 6453282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 34196491 - 34196409
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactta 171  Q
    ||||||| ||||||||||||| ||||||||||||||||||||| |||| |||  | ||| |||||||||||||||||||||||    
T  34196491 aaattacagacattataaaatgatttttagaaaattgaattaacaacaagataaacgatcatataatacttcaaaaacactta 34196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 9434360 - 9434445
Alignment:
Q  89 aaattacggacattataaaa-taatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||  ||||| |||||||||||||||| ||||||||    
T  9434360 aaattacggatattataaaaataatttttaaaaaattgaattaacaacatgataaatgataatataatacttcaaaaccacttaat 9434445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 43826500 - 43826431
Alignment:
Q  103 ataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaa 172  Q
    ||||||||||||||||||||||||||||| ||||||||  ||||| ||| ||||||||||||||||||||    
T  43826500 ataaaataatttttagaaaattgaattaacaacatgataaatgatcataaaatacttcaaaaacacttaa 43826431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 39449474 - 39449402
Alignment:
Q  101 ttataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||    
T  39449474 ttataaaattatttttaaaaaattgaattaacaacatgattaatgatcatataatacttcaaaaacagttaat 39449402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 29937684 - 29937614
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatactt 159  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||||||  ||||| |||||||||||    
T  29937684 aaattatggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatactt 29937614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 8671854 - 8671940
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatg--attgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || |||  |   ||||| ||||||||||||||||| |||||||    
T  8671854 aaattacggacattataaaatgatttttagaaaattgaattaacaatatgaaaaaaatgatcatataatacttcaaaaatacttaat 8671940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 9933416 - 9933339
Alignment:
Q  96 ggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||||| ||||| | ||||||||||||| ||||||||  ||||| |||||||| |||||||| |||||||    
T  9933416 ggacattataaaatgattttaaaaaaattgaattaacaacatgataaatgatcatataatatttcaaaaatacttaat 9933339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 24243139 - 24243193
Alignment:
Q  119 aaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||| ||||||||||||  ||||| ||||||||||||||  |||||||||    
T  24243139 aaaattgaaataataacatgataaatgatcatataatacttcaatcacacttaat 24243193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 31543313 - 31543284
Alignment:
Q  40 gtgtgtttcgattgagggtttaggagggga 69  Q
    ||||||||||||||||||||||||||||||    
T  31543313 gtgtgtttcgattgagggtttaggagggga 31543284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 5688572 - 5688507
Alignment:
Q  112 tttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaatctat 177  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5688572 tttttagaaaattgaattaacaacatgattgatgatgatataatacttcaaaaacacttaatctat 5688507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 34980992 - 34980908
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| |||||||||||||| |||| ||||||||||| |||| ||||||||  ||||| |||||||||||||||||||||||||    
T  34980992 aaattatggacattataaaatgatttatagaaaattgagttaacaacatgataaatgattatataatacttcaaaaacacttaat 34980908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 40305727 - 40305811
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||| || |||||  ||||| ||||| |||||||||||| ||||||    
T  40305727 aaattacagacattataaaataatttttagaaaattgaattaacaatatgataaatgatcatatagtacttcaaaaacccttaat 40305811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 10043434 - 10043350
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||| | |||||||||| ||||||||||||||||||||| ||||| ||  || || |||||||||||||||||||||||||    
T  10043434 aaattacgaatattataaaatgatttttagaaaattgaattaacaacattataaataatcatataatacttcaaaaacacttaat 10043350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 21581129 - 21581045
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| |||| |||| |||||||||||||||||||||||||| ||||||||  ||| | |||| ||||||||||||||||||||    
T  21581129 aaattatggacgttatgaaataatttttagaaaattgaattaacaacatgataaatgttcatatgatacttcaaaaacacttaat 21581045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 33744255 - 33744339
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| |||||||||||||| |||||| |||||||||||||| ||||||||  ||||| ||||| | |||||||||||||||||    
T  33744255 aaattatggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcatatatttcttcaaaaacacttaat 33744339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 6382506 - 6382425
Alignment:
Q  92 ttacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||  ||| | || | |||||||||||| |||||||    
T  6382506 ttacggacattataaaatactttttagaaaattgaattaacaacatgataaatgttcatgtgatacttcaaaaagacttaat 6382425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 10204755 - 10204674
Alignment:
Q  92 ttacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||| ||||||| ||||| ||||||| ||||||||||||| ||| | ||  ||||| |||||||||||||||||||||||||    
T  10204755 ttacagacattaaaaaatgatttttaaaaaattgaattaacaacgtaataaatgatcatataatacttcaaaaacacttaat 10204674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 8551488 - 8551564
Alignment:
Q  97 gacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||| ||||||| |||||| |||||| ||||| ||  ||||| ||||||||||| |||||||||||||    
T  8551488 gacattataaaatgatttttaaaaaattaaattaacaacattataaatgatcatataatactttaaaaacacttaat 8551564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 10043080 - 10043155
Alignment:
Q  98 acattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| | ||| |||| |||||||||||||||| ||||||||  ||||| ||||||||||| |||||||||||||    
T  10043080 acattaaagaattatttctagaaaattgaattaacaacatgataaatgatcatataatactttaaaaacacttaat 10043155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 6597852 - 6597920
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatac 157  Q
    |||||||||||||| |||||| |||||| |||||||||| ||| ||||||||  ||||| |||||||||    
T  6597852 aaattacggacattgtaaaatgattttttgaaaattgaaataacaacatgataaatgatcatataatac 6597920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 12035998 - 12036081
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| | |||||||||||| ||| ||||||||||||||| | ||||||||  || || ||||||||||| |||||||||||||    
T  12035998 aaattatgaacattataaaattattattagaaaattgaatt-acaacatgataaattatcatataatacttaaaaaacacttaat 12036081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 15986689 - 15986770
Alignment:
Q  92 ttacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||| ||||||||||||| | ||||| ||||||||||||| |||||     ||||| ||||||||||| |||||||||||||    
T  15986689 ttacagacattataaaatgacttttaaaaaattgaattaacaacatttaaaatgatcatataatactttaaaaacacttaat 15986770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 42772214 - 42772130
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  42772214 aaattacggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaat 42772130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 26135979 - 26135895
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||  || || |||||||||||||||||||||||||    
T  26135979 aaattacggacattataaaataattttttgaaaattgaattaacaatatgataaataattatataatacttcaaaaacacttaat 26135895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 34641172 - 34641090
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||  ||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  34641172 aaattacggacattataaaatgattt--agaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaat 34641090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 24253904 - 24253820
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| | ||||||||| ||||||||| ||||||||  ||||| |||||| ||||||||||||||||||    
T  24253904 aaattacggacattataaaatgagttttagaaagttgaattaacaacatgataaatgattatataacacttcaaaaacacttaat 24253820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 40858747 - 40858667
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacact 169  Q
    ||||||||||||||||||||| || ||| |||||||||||||| ||||||||  ||||| |||||||||||||||||||||    
T  40858747 aaattacggacattataaaatgatcttttgaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacact 40858667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 42699674 - 42699758
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| |||||||||||||||| ||||||||||||||||||  || |||||  ||||| |||||||||||||||||||||||||    
T  42699674 aaattatggacattataaaataaattttagaaaattgaattatcaatatgataaatgatcatataatacttcaaaaacacttaat 42699758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 17474268 - 17474352
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||||||||||  ||||||||||||| || |||||  || || | |||||||||||||||||||||||    
T  17474268 aaattacggacattataaaataattttttaaaaattgaattaacaatatgataaataatcaaataatacttcaaaaacacttaat 17474352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 8432322 - 8432405
Alignment:
Q  90 aattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| ||||||||||||| ||||||| ||||||||||||| ||||||||  || ||  ||||||||||||||||||||||||    
T  8432322 aattacagacattataaaatgatttttacaaaattgaattaacaacatgataaataattttataatacttcaaaaacacttaat 8432405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 36727358 - 36727276
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactta 171  Q
    |||||||| |||||||||||||||||| |||||||| | |||| ||||||||  || || |||||||||||||||||||||||    
T  36727358 aaattacgaacattataaaataattttaagaaaattaacttaacaacatgataaattatcatataatacttcaaaaacactta 36727276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 41414253 - 41414183
Alignment:
Q  96 ggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaac 166  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||  ||||| ||||||||||||||||||    
T  41414253 ggacattataaaatgatttttagaaaattgagttaacaacatgataaatgatcatataatacttcaaaaac 41414183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 10943687 - 10943760
Alignment:
Q  100 attataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| ||||||||||||||||||||| ||||| ||  || || |||||||||||||||||||||||||    
T  10943687 attataaaatgatttttagaaaattgaattaacaacataataaataattatataatacttcaaaaacacttaat 10943760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 48683795 - 48683710
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataaca-tgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||| |||||||||||| |||||||| |||||||||||| |||| ||||  ||||| |||||||| ||||||||||||||||    
T  48683795 aaattacgaacattataaaatgatttttaggaaattgaattaacaacattgataaatgatcatataatatttcaaaaacacttaat 48683710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 21090133 - 21090217
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| || |||||||||  |||||| |||||||||||||| ||||||||  || || |||||||||||||||||||||||||    
T  21090133 aaattacagatattataaaacgattttttgaaaattgaattaacaacatgatatattatcatataatacttcaaaaacacttaat 21090217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 44412543 - 44412459
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||| ||| | |||||| |||||| |||||||||||||| ||||||||  || || |||||||||||||||||||||||||    
T  44412543 aaattacgaacaatgtaaaatgattttttgaaaattgaattaacaacatgataaatcatcatataatacttcaaaaacacttaat 44412459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 18086042 - 18086127
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgat-tgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| |||||||||||||  |||||||||||||||||||| ||||| ||   ||||| ||| |||||||||||||||||||||    
T  18086042 aaattacagacattataaaatgttttttagaaaattgaattaacaacataataaaatgatcataaaatacttcaaaaacacttaat 18086127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 27197734 - 27197795
Alignment:
Q  112 tttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||||| ||| | |||||||    
T  27197734 tttttagaaaattgaattaacaacatgatagatgatcatataatactttaaatatacttaat 27197795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 46978594 - 46978525
Alignment:
Q  104 taaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| ||||||| |||||| |||||| ||||||||  ||||| ||||||||||||||||||| |||||    
T  46978594 taaaatgatttttataaaatttaattaacaacatgataaatgattatataatacttcaaaaacatttaat 46978525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 55428561 - 55428492
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatact 158  Q
    ||||||||||||||| || || ||||||||||||||||||||| ||| ||||  ||||| ||||||||||    
T  55428561 aaattacggacattacaagatgatttttagaaaattgaattaacaacgtgataaatgatcatataatact 55428492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 16884047 - 16884117
Alignment:
Q  102 tataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| || ||||| |||||||||| || ||||||||  ||||| |||||||||||||||||||||||||    
T  16884047 tataaaaaaaattttaaaaaattgaat-aacaacatgataaatgatcatataatacttcaaaaacacttaat 16884117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 54985755 - 54985806
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgat 140  Q
    ||||||||||||||||||| | ||||||||||||||||||||| || |||||    
T  54985755 aaattacggacattataaattgatttttagaaaattgaattaacaatatgat 54985806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 34641005 - 34641041
Alignment:
Q  40 gtgtgtttcgattgagggtttaggaggggagggctca 76  Q
    |||||||| ||||||||||||||||||||||||||||    
T  34641005 gtgtgtttggattgagggtttaggaggggagggctca 34641041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 15085762 - 15085846
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||  ||||| |||||||||||||||||||||||||    
T  15085762 aaattacggacattataaaatgatttttagaaaattgaattaacaacttgataaatgatcatataatacttcaaaaacacttaat 15085846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 2381060 - 2381133
Alignment:
Q  100 attataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  2381060 attataaaatgaattttagaaaattgaattgacaacatgattgatgatgatataatacttcaaaaacacttaat 2381133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 35325443 - 35325367
Alignment:
Q  97 gacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||    
T  35325443 gacattataaaataatttttaaaaaattgaattaataacatgataaatgatcatataatacttcaaaaatacttaat 35325367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 45257489 - 45257405
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| |||||||||| |||||| |||||||||||||| || |||||  ||||| |||||||||||||||||||||||||    
T  45257489 aaattacggatattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatacttcaaaaacacttaat 45257405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 34187759 - 34187673
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgat--gatataatacttcaaaaacacttaat 173  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||||||  |||||   |||||||||||||||||||||||||    
T  34187759 aaattatggacattataaaatgatttttagaaaattgaattaacaacatgataaatgattatatataatacttcaaaaacacttaat 34187673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 45098351 - 45098267
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| |||||||||||||  |||||  ||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  45098351 aaattacagacattataaaatggtttttgaaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaat 45098267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 1052828 - 1052901
Alignment:
Q  100 attataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||  ||||||| |||||||||| |||||    
T  1052828 attataaaataatttttagaaaattgaattaacaacatgataaatgatcgtataatatttcaaaaacatttaat 1052901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 31928121 - 31928190
Alignment:
Q  104 taaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| ||||||  ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  31928121 taaaatgatttttttaaaattgaattaataacatgataaatgatcatataatacttcaaaaacacttaat 31928190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 36052149 - 36052230
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    |||||||  |||||||||||| ||||||||||||||||||||| ||||| ||  ||||| |||| |||||||||||||||||    
T  36052149 aaattacatacattataaaatgatttttagaaaattgaattaacaacatcatacatgatcatatgatacttcaaaaacactt 36052230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 8554361 - 8554441
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacact 169  Q
    ||||||||||||||||||||||||||||  ||||||||||||| | ||||||  |||||  || |||||||||||||||||    
T  8554361 aaattacggacattataaaataattttttaaaaattgaattaacatcatgataaatgatcgtacaatacttcaaaaacact 8554441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 21502211 - 21502131
Alignment:
Q  93 tacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| |||||||||||||||| ||||||||| ||||| |||| |||  ||| | |||||||||||||||||||||||||    
T  21502211 tacggatattataaaataattttaagaaaattgcattaacaacaagataaatggtcatataatacttcaaaaacacttaat 21502131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 31061541 - 31061457
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| ||||||||||| | | |||| |||||||||||||| ||||||||  ||||| |||||||| ||||||||||||||||    
T  31061541 aaattacagacattataaagtgactttttgaaaattgaattaacaacatgataaatgatcatataatatttcaaaaacacttaat 31061457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 3094415 - 3094494
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacac 168  Q
    |||||||| || ||||||||| ||| ||||||||||||||||| ||||||||  || || ||||||||||||||||||||    
T  3094415 aaattacgaacgttataaaatgattcttagaaaattgaattaacaacatgataaataatcatataatacttcaaaaacac 3094494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 16713703 - 16713657
Alignment:
Q  93 tacggacattataaaataatttttagaaaattgaattaataacatga 139  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  16713703 tacggatattataaaataatttttagaaaattgaattaataacatga 16713657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 22356100 - 22356059
Alignment:
Q  136 atgattgatgatgatataatacttcaaaaacacttaatctat 177  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22356100 atgattgatgatgatataatacttcaaaaacacttaatctat 22356059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 33265773 - 33265704
Alignment:
Q  104 taaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| |||||| |||||||||||||| || |||||  ||||| |||||||||||||||||||||||||    
T  33265773 taaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatacttcaaaaacacttaat 33265704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 42296365 - 42296449
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| |||||||||| | |||||||||| |||||||| ||||| ||  ||||| |||||||| || |||||||||||||    
T  42296365 aaattacggatattataaaatgaattttagaaaaatgaattaacaacataataaatgatcatataataatttaaaaacacttaat 42296449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 42813802 - 42813726
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaa 165  Q
    |||||||| |||||||||||| ||||||||||||||||||||| ||| ||||  || || ||||||||||| |||||    
T  42813802 aaattacgaacattataaaatgatttttagaaaattgaattaacaacctgataaataatcatataatactttaaaaa 42813726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 9313169 - 9313081
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgat---tgat-gatgatataatacttcaaaaacacttaat 173  Q
    ||||||| ||||||||||||| |||||| |||||||||||||| ||| ||||   |||| ||| |||| ||||||||||||||||||||    
T  9313169 aaattacagacattataaaatgatttttcgaaaattgaattaacaacttgataaatgatcgatcatattatacttcaaaaacacttaat 9313081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 22356186 - 22356133
Alignment:
Q  89 aaattacggacatt-ataaaataatttttagaaaattgaattaataacatgatt 141  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| || ||||||    
T  22356186 aaattacggacatttataaaatgatttttagaaaattgaattaacaaaatgatt 22356133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 12541773 - 12541805
Alignment:
Q  40 gtgtgtttcgattgagggtttaggaggggaggg 72  Q
    |||||||| ||||||||||||||||||||||||    
T  12541773 gtgtgtttggattgagggtttaggaggggaggg 12541805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 15353544 - 15353463
Alignment:
Q  90 aattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactta 171  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||| ||  ||||| ||||||||| |||||||||||||    
T  15353544 aattacggacattataaaatgatttttagaaaattgaattaacaacattataaatgatcatataatacatcaaaaacactta 15353463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 4097302 - 4097381
Alignment:
Q  94 acggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||  ||||| ||| |||||||| ||||||||||||    
T  4097302 acggacattataaaatattttttagaaaattgaattaacaacatgataaatgatcatacaatacttccaaaacacttaat 4097381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 15323406 - 15323323
Alignment:
Q  90 aattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||   ||||| ||||||||| ||| |||||||||||    
T  15323406 aattacggacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataatacatcagaaacacttaat 15323323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 31799103 - 31799025
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaaca 167  Q
    |||||||||| |||||||||||||||||  ||||||||||||| ||||||||  ||||| |||||||||||||||||||    
T  31799103 aaattacggatattataaaataattttttaaaaattgaattaacaacatgataaatgatcatataatacttcaaaaaca 31799025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 9051596 - 9051680
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| |||||||||| ||||||||||||||||||||| ||||||||  ||||| ||||  ||||| |||||||||||||    
T  9051596 aaattacggatattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatatgctactttaaaaacacttaat 9051680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 25468461 - 25468545
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| |||||||||||||||||||| |||||||| | |||| ||| ||||  ||||| |||||||||||||||||||||||||    
T  25468461 aaattatggacattataaaataattttaagaaaattaatttaacaacgtgataaatgattatataatacttcaaaaacacttaat 25468545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 3841268 - 3841183
Alignment:
Q  89 aaattacggacattataaaataattttt--agaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||||||||| ||||||  | ||||||||||||| || |||||  |||||||||||||||||||||||||||||||    
T  3841268 aaattacggacattataaaatgatttttttacaaaattgaattaacaa-atgataaatgatgatataatacttcaaaaacacttaat 3841183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 26318475 - 26318403
Alignment:
Q  101 ttataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||| | ||||||||||||||||||| ||||||||   |||| |||||||||||||||||||||||||    
T  26318475 ttataaaatgacttttagaaaattgaattaacaacatgataattgatcatataatacttcaaaaacacttaat 26318403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 15373668 - 15373739
Alignment:
Q  96 ggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaaca 167  Q
    |||||||||||||| ||||||||||||||||||||| |||||||   ||||| ||||||||| |||||||||    
T  15373668 ggacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataatacatcaaaaaca 15373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 10293430 - 10293354
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaa 165  Q
    ||||||| || |||||||||| |||||||||||| |||||| | ||||| ||  || || |||||||||||||||||    
T  10293430 aaattacagatattataaaatgatttttagaaaactgaattgacaacatcataaataatcatataatacttcaaaaa 10293354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 34176633 - 34176711
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaaca 167  Q
    |||||||| | |||||||| | ||||||| ||||||||||||| || || ||  ||||| |||||||| ||||||||||    
T  34176633 aaattacgaaaattataaattgatttttaaaaaattgaattaacaatataataaatgatcatataatatttcaaaaaca 34176711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 69
Target Start/End: Complemental strand, 30487546 - 30487517
Alignment:
Q  40 gtgtgtttcgattgagggtttaggagggga 69  Q
    ||||||||||||||||||||||||||||||    
T  30487546 gtgtgtttcgattgagggtttaggagggga 30487517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 1300632 - 1300664
Alignment:
Q  40 gtgtgtttcgattgagggtttaggaggggaggg 72  Q
    |||||||| ||||||||||||||||||||||||    
T  1300632 gtgtgtttggattgagggtttaggaggggaggg 1300664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 1085552 - 1085636
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||| | ||||||  ||||| |||||||||||||||||||||||||    
T  1085552 aaattacggacattagaaaatgatttttagaaaattgaactaacagcatgataaatgatcatataatacttcaaaaacacttaat 1085636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 33643450 - 33643366
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| | ||||| |||||| |||||||||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||    
T  33643450 aaattatgaacattttaaaatgatttttagaaaattgaattaataatatgatgaatgatcatataatacttcaaaaacacttaat 33643366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 47071233 - 47071150
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaa 172  Q
    ||||||||||||||||||||| |||||||||||||| |||||| ||||||||  ||||| ||| |||| |||||||||||||||    
T  47071233 aaattacggacattataaaatgatttttagaaaatttaattaacaacatgataaatgatcataaaatatttcaaaaacacttaa 47071150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 25268446 - 25268362
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| |||||||||| |||||||||||||| ||| || ||| ||||  ||||| |||||||||||||||||||||||||    
T  25268446 aaattacggaaattataaaatgatttttagaaaatttaatcaacaacgtgataaatgatcatataatacttcaaaaacacttaat 25268362  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 40709354 - 40709438
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||| | ||||||||||||||||||||||||| ||||||  | |||||  ||||| |||||||||||||||||||||||||    
T  40709354 aaattacgaatattataaaataatttttagaaaattaaattaacgatatgataaatgatcatataatacttcaaaaacacttaat 40709438  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 35512979 - 35512909
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatactt 159  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||||||  ||||| |||||||||||    
T  35512979 aaattatggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatactt 35512909  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 2506721 - 2506637
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| || |||||||||||||||||| ||||| ||||||| || || ||  ||||| |||||||||||||||||||||||||    
T  2506721 aaattacagatattataaaataatttttaaaaaatcgaattaacaatataataaatgatcatataatacttcaaaaacacttaat 2506637  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 35927982 - 35927911
Alignment:
Q  101 ttataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||||| ||||||||||||||| ||||||||  ||||| ||||||||||||||||| |||||||    
T  35927982 ttataaaataatttt-agaaaattgaattaacaacatgataaatgatcatataatacttcaaaaatacttaat 35927911  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 51303461 - 51303530
Alignment:
Q  104 taaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| ||||||  ||||||||||||| ||||||||  ||||| |||||||||||||||||||||||||    
T  51303461 taaaatgatttttttaaaattgaattaacaacatgataaatgatcatataatacttcaaaaacacttaat 51303530  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 525163 - 525245
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| || |||||  ||||| ||||||||||||||| | |||||||    
T  525163 aaattacggacat-ataaaataatttttagaaa-ttgaattaacaatatgataaatgattatataatacttcaaacaaacttaat 525245  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 13386982 - 13387065
Alignment:
Q  90 aattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||| |||||| ||||||  ||||||||||||||||||||| ||||||||  ||||| |||||||||   |||||||||||||    
T  13386982 aattatggacatcataaaacgatttttagaaaattgaattaacaacatgataaatgatcatataatacacaaaaaacacttaat 13387065  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 20607397 - 20607317
Alignment:
Q  90 aattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||| |||||||||||||| |||||| ||||||| ||||||   ||||||  || || |||||||||||||||||||||||||    
T  20607397 aattatggacattataaaatgattttttgaaaattaaattaa---catgatatattatcatataatacttcaaaaacacttaat 20607317  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 173
Target Start/End: Original strand, 40287324 - 40287401
Alignment:
Q  96 ggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||| | |||| | ||||||||||||||||||| || || ||  ||||| |||||||||||||||||||||||||    
T  40287324 ggacattgtgaaatgagttttagaaaattgaattaacaaaatcataaatgattatataatacttcaaaaacacttaat 40287401  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 1344730 - 1344646
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||||||| |||||| |||||||||||||||||  || ||||||||  || |  ||||| ||| |||||||||||||||    
T  1344730 aaattacggacattgtaaaatgatttttagaaaattgaaccaacaacatgataaataaacatatattacatcaaaaacacttaat 1344646  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 17622694 - 17622635
Alignment:
Q  114 tttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||| ||||||||||||||||||||||   |||| |||||||||||| ||||||||||||    
T  17622694 tttaaaaaattgaattaataacatgataagtgatcatataatacttctaaaacacttaat 17622635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 51303387 - 51303419
Alignment:
Q  40 gtgtgtttcgattgagggtttaggaggggaggg 72  Q
    |||||||| ||||||||||||||||||||||||    
T  51303387 gtgtgtttggattgagggtttaggaggggaggg 51303419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 52707827 - 52707751
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaa 165  Q
    |||||||  ||||||| |||||||||||  |||| |  | ||| ||||||||  |||||||||||||||||||||||    
T  52707827 aaattaccaacattatcaaataatttttttaaaaatttaataacaacatgataaatgatgatataatacttcaaaaa 52707751  T

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Target: scaffold0007 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 242398 - 242317
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    ||||||||||||||||||||| ||||||| |||||||||||||  |||||||  |||||||||||||| |||||||| ||||    
T  242398 aaattacggacattataaaatgatttttaaaaaattgaattaacgacatgataaatgatgatataataattcaaaaatactt 242317  T

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Target: scaffold0095 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 8317 - 8245
Alignment:
Q  101 ttataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||    
T  8317 ttataaaattatttttaaaaaattgaattaacaacatgattaatgatcatataatacttcaaaaacagttaat 8245  T

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Target: scaffold0026 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 1465 - 1543
Alignment:
Q  95 cggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    ||||||||||| ||| ||||||||||||||||||||| ||| ||||  ||||| ||||||||||| ||||| |||||||    
T  1465 cggacattatagaatgatttttagaaaattgaattaacaacttgataaatgatcatataatacttaaaaaatacttaat 1543  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 184789 - 184704
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttca-aaaacacttaat 173  Q
    |||||| |||||||||||||| ||||||  ||||||||||||| ||||||||  || || ||||||||||||| ||||||||||||    
T  184789 aaattatggacattataaaatgatttttttaaaattgaattaacaacatgatatattatcatataatacttcaaaaaacacttaat 184704  T

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Target: scaffold0012; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 184614 - 184646
Alignment:
Q  40 gtgtgtttcgattgagggtttaggaggggaggg 72  Q
    |||||||| ||||||||||||||||||||||||    
T  184614 gtgtgtttggattgagggtttaggaggggaggg 184646  T

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Target: scaffold0071 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 53067 - 52983
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||| || |||||| |||| |||||| |||||||||| ||| ||||||||  ||||| |||||||| ||||||||||||||||    
T  53067 aaattatgggcattatgaaatgattttttgaaaattgaactaacaacatgataaatgatcatataatatttcaaaaacacttaat 52983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 17711 - 17640
Alignment:
Q  100 attataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactta 171  Q
    |||||||||| |||||| |||||||||||||  ||||||||  || || ||||||||||||||| |||||||    
T  17711 attataaaatgattttttgaaaattgaattagcaacatgataaataatcatataatacttcaaatacactta 17640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1414 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 473 - 399
Alignment:
Q  100 attataaaataatttttagaaaattgaa-ttaataacatgattgatgatgatataatacttcaaaaacacttaat 173  Q
    |||||||||| |||||||||||||| || |||| | ||||||  ||||| ||| |||||||||||||||||||||    
T  473 attataaaatgatttttagaaaattaaaattaacagcatgataaatgataataaaatacttcaaaaacacttaat 399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 37565 - 37484
Alignment:
Q  89 aaattacggacattataaaataatttttagaaaattgaattaataacatgattgatgatgatataatacttcaaaaacactt 170  Q
    ||||||| |||| ||||| || |||||||||||| | |||||| ||||||||   |||| |||||| |||||||||||||||    
T  37565 aaattacagacaatataagatgatttttagaaaacttaattaacaacatgataagtgatcatataacacttcaaaaacactt 37484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 81498 - 81546
Alignment:
Q  114 tttagaaaattgaattaataacatgattgatgatgatataatacttcaa 162  Q
    |||| ||||||||| ||||||||||||  ||||| ||||||||||||||    
T  81498 tttaaaaaattgaaataataacatgataaatgatcatataatacttcaa 81546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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