View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_high_1 (Length: 811)
Name: NF14487_high_1
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 15 - 798
Target Start/End: Complemental strand, 35922312 - 35921535
Alignment:
| Q |
15 |
atcacctcagtttctctacctcttccacctaaatcatcaccttcttcaccttccacttccacttccacttccactcttgagccaaaccaactcaaagccc |
114 |
Q |
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| T |
35922312 |
atcacctcagtttctctacctcttccacctaaatcatcaccttcttcaccttccacttccacttccact------cttgagccaaaccaactcaaagccc |
35922219 |
T |
|
| Q |
115 |
ttcaatccctcaacatccccacatcaaagaacccttgcatccaaccatctttccacaatgccacacaatgtgactcttcaaaaccctttagccacctcat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922218 |
ttcaatccctcaacatccccacatcaaagaacccttgcatccaaccatctttccacaatgccacacaatgtgactcttcaaaaccctttagccacctcat |
35922119 |
T |
|
| Q |
215 |
ttcccttaccctttcaaactgttcaacctccctatctctctcctacaatgccctcaaatccctctctaccctccaatcccttcacttccttaactgcccc |
314 |
Q |
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| T |
35922118 |
ttcccttaccctttcaaactgttcaacctccctatctctctcctacaatgccctcaaatccctctctaccctccaatcccttcacttccttaactgcccc |
35922019 |
T |
|
| Q |
315 |
attgctccaattcacttccctcctcaactcacatcctctcttctctccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacc |
414 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35922018 |
attgctccaattcacttccctcctcaactcacatcctctcttctctccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacc |
35921919 |
T |
|
| Q |
415 |
tagcaaacctcactgatctcactgtctcaaataccccaatcaaagcttctggaccttacgttatccttgctcacatgaaaaagctcaaaactttaaccat |
514 |
Q |
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| T |
35921918 |
tagcaaacctcactgatctcactgtctcaaataccccaatcaaagcttctggaccttatgttatccttgctcacatgaaaaagctcaaaactttaaccat |
35921819 |
T |
|
| Q |
515 |
ttccaattccaatctcactggttttctaccaaaatacatccattccaacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35921818 |
ttccaattccaatctcactggttttctaccaaaatacatccattccaacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttt |
35921719 |
T |
|
| Q |
615 |
tccattaccatgcttgatggccttgaaagtttgaatctttcttcaaatgggttgaagggtgagataccctcttcattaggggacttaatttcccttaaaa |
714 |
Q |
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| T |
35921718 |
tccattaccatgcttgatggccttgaaagtttgaatctttcttcaaatgggctgaagggtgagataccctcttcattaggggacttaatttcccttaaaa |
35921619 |
T |
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| Q |
715 |
atctttctttggcttcaaattcattttcagggtctatcccagattcaatttctgcaattccaggtttggttcacatggatctga |
798 |
Q |
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| T |
35921618 |
atctttctttggcttcaaattcattttcagggtctatcccagattcaatttctgcaattccaggtttggttcacatggatctga |
35921535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 361 - 766
Target Start/End: Complemental strand, 5124098 - 5123693
Alignment:
| Q |
361 |
ccttcacctccatcaacagtctccacaagatctcaggtgtatggctctctcacctagcaaacctcactgatctcactgtctcaaataccccaatcaaagc |
460 |
Q |
| |
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||||||| | ||||||||| || |||| ||||| ||||| ||||| ||||| || || ||||||||||| ||| |||||||| | | ||||||| |
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| T |
5124098 |
ccttcactttcatcaacagcttcaacaaaatctctggtgtttggctttctcagcttcataatctcactgatcttactatctcaaatgttcaagtcaaagc |
5123999 |
T |
|
| Q |
461 |
ttctggaccttacgttatccttgctcacatgaaaaagctcaaaactttaaccatttccaattccaatctcactggttttctaccaaaatacatccattcc |
560 |
Q |
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|||||| ||||| || || |||| ||||||||| | ||||| | || |||||||| ||| | ||||||||||| ||| |||| | || ||||| |
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| T |
5123998 |
ttctggtccttatgtcattcttggtcacatgaactacctcaactcattgaccatttctaatgcaaatctcactggctttttacctggtcatattcattct |
5123899 |
T |
|
| Q |
561 |
aacctgacccacatagatttttcatccaacaatctcaaaggaaacatacccttttccattaccatgcttgatggccttgaaagtttgaatctttcttcaa |
660 |
Q |
| |
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|| |||||||| | ||||||||| || | ||||||||||| ||||||||||| ||||| |||||||| | | |||||||||||||||||||| | |
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| T |
5123898 |
aatctgacccatgttgatttttcaggtaatcaactcaaaggaaatatacccttttcaattacaatgcttgaaagtttagaaagtttgaatctttcttcta |
5123799 |
T |
|
| Q |
661 |
atgggttgaagggtgagataccctcttcattaggggacttaatttcccttaaaaatctttctttggcttcaaattcattttcagggtctatcccagattc |
760 |
Q |
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|| | | ||||| ||||||||||| | || ||||| ||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
5123798 |
ataagcttgttggtgaaataccctcttccattggtgacttgatttctctaaaaaatctatctttagcttcaaattcattttctgggtctatcccagattc |
5123699 |
T |
|
| Q |
761 |
aatttc |
766 |
Q |
| |
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| |||| |
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| T |
5123698 |
attttc |
5123693 |
T |
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