View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_high_14 (Length: 349)
Name: NF14487_high_14
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 13878684 - 13878338
Alignment:
| Q |
1 |
atctccaaatggagactttgaataggacaattttgcagtttattatcatgttaacctgtgagttgaataggtatatagattgattatcattggtttgcag |
100 |
Q |
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| T |
13878684 |
atctccaaatggagactttgaataggacaattttgcagtttattatcatgttaacctgtgagttgaataggtatatagattgattatcattggtttgcag |
13878585 |
T |
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| Q |
101 |
caagttaagatattgggagcagatagatggtctcattctattatgaaaccagcttgagttaattactcaatcttacctacaaatattaatcggat----- |
195 |
Q |
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| T |
13878584 |
caagttaagatattgggagcagatagatggtctcaatctattatgaaaccagcttgagttaatcactcaatcttacctacaaatattaatcggatagctt |
13878485 |
T |
|
| Q |
196 |
-------atgctttcccttcttacattcactcatttttgactgcccatgcccagggaacccagagaacagattcatgctcccttgaaagtgatggaggtg |
288 |
Q |
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| T |
13878484 |
atggttcatgctttcccttcttacattcactcatttttgactgcccatgcccagggaatccagagaacagattcatgctcccttgaaagtgaaggaggtg |
13878385 |
T |
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| Q |
289 |
atgcataggccaccctttgaggctctcagcttagcaagctccatatt |
335 |
Q |
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| T |
13878384 |
atgcataggccaccctttgaggctctcagcttagcaagctccatatt |
13878338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 14367071 - 14367182
Alignment:
| Q |
47 |
catgttaacctgtgagttgaataggtatatagattgatta-tcattggtttgcagcaagttaagatattgggagcagatagatggtctcattctattatg |
145 |
Q |
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| T |
14367071 |
catgttaacctgtgagtggaataggaatttagattgattactatttggtttacagcaagttcagatattgggagc----agatggtctcattctaatata |
14367166 |
T |
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| Q |
146 |
aaaccagcttgagtta |
161 |
Q |
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| T |
14367167 |
aaaccagcttgtgtta |
14367182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 14367333 - 14367412
Alignment:
| Q |
254 |
aacagattcatgctcccttgaaagtgatggaggtgatgcataggccaccctttgaggctctcagcttagcaagctccatat |
334 |
Q |
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| T |
14367333 |
aacagactcatgc-cccttaacagtgaaggaggtgatgcataagccaccatttgaggttctcagcctagcaagctccatat |
14367412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 13881339 - 13881258
Alignment:
| Q |
76 |
tagattgattatcattggtttgcagcaagttaagatattgggagcagatagatggtctcattctattatgaaaccagcttgagtta |
161 |
Q |
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| T |
13881339 |
tagattgactatcattggattgcagaaagttaagatattggaagc----agatggtctcatcctatcataaaaccagcttgtgtta |
13881258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16024853 - 16024811
Alignment:
| Q |
1 |
atctccaaatggagactttgaataggacaattttgcagtttat |
43 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
16024853 |
atctccaaatggagactttgaagaggataattttgcagtttat |
16024811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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