View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14487_low_10 (Length: 404)

Name: NF14487_low_10
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14487_low_10
NF14487_low_10
[»] chr4 (24 HSPs)
chr4 (25-389)||(30198868-30199234)
chr4 (280-389)||(38136931-38137040)
chr4 (281-389)||(28175561-28175669)
chr4 (280-389)||(12708931-12709040)
chr4 (280-389)||(29114330-29114440)
chr4 (280-389)||(16318492-16318601)
chr4 (280-389)||(33500395-33500504)
chr4 (278-362)||(50496370-50496454)
chr4 (280-362)||(49668227-49668309)
chr4 (280-389)||(45823430-45823539)
chr4 (281-381)||(55509764-55509864)
chr4 (280-386)||(52636636-52636742)
chr4 (281-361)||(41709242-41709322)
chr4 (280-381)||(56426813-56426914)
chr4 (281-365)||(16422795-16422878)
chr4 (280-356)||(42650518-42650591)
chr4 (311-361)||(45971468-45971518)
chr4 (280-353)||(675246-675319)
chr4 (280-356)||(3075890-3075966)
chr4 (301-362)||(16461681-16461742)
chr4 (281-378)||(16535567-16535664)
chr4 (313-382)||(48620188-48620256)
chr4 (318-362)||(51153660-51153704)
chr4 (325-361)||(51974249-51974285)
[»] chr7 (16 HSPs)
chr7 (280-389)||(4058236-4058345)
chr7 (280-389)||(16805664-16805773)
chr7 (280-389)||(38505431-38505540)
chr7 (281-389)||(15749046-15749154)
chr7 (280-361)||(42253835-42253916)
chr7 (278-368)||(2826364-2826454)
chr7 (278-362)||(32650504-32650588)
chr7 (278-389)||(45940497-45940608)
chr7 (284-362)||(43741586-43741664)
chr7 (280-386)||(6746669-6746772)
chr7 (280-362)||(30080847-30080929)
chr7 (280-389)||(46442584-46442693)
chr7 (281-361)||(34670072-34670152)
chr7 (281-353)||(19791563-19791640)
chr7 (323-356)||(38987314-38987347)
chr7 (271-304)||(44487504-44487537)
[»] chr1 (22 HSPs)
chr1 (280-389)||(34154425-34154534)
chr1 (280-381)||(29091962-29092063)
chr1 (280-389)||(37649713-37649822)
chr1 (280-389)||(17760572-17760682)
chr1 (280-389)||(36269618-36269727)
chr1 (280-381)||(36886745-36886846)
chr1 (280-382)||(52068244-52068346)
chr1 (280-389)||(27255084-27255193)
chr1 (306-389)||(5584406-5584489)
chr1 (306-362)||(2909040-2909096)
chr1 (311-378)||(46001473-46001540)
chr1 (291-381)||(41817403-41817493)
chr1 (280-384)||(38795431-38795535)
chr1 (321-389)||(33324550-33324618)
chr1 (282-356)||(50586925-50586999)
chr1 (283-356)||(49103081-49103154)
chr1 (306-362)||(4204900-4204956)
chr1 (280-356)||(17556543-17556619)
chr1 (278-356)||(28718921-28719000)
chr1 (280-328)||(31920172-31920220)
chr1 (321-389)||(39887023-39887091)
chr1 (313-389)||(50225948-50226024)
[»] scaffold0128 (1 HSPs)
scaffold0128 (280-389)||(26254-26363)
[»] chr2 (28 HSPs)
chr2 (281-389)||(37194142-37194251)
chr2 (280-389)||(11514919-11515028)
chr2 (280-389)||(13018575-13018684)
chr2 (280-389)||(6655993-6656102)
chr2 (280-386)||(4003303-4003409)
chr2 (280-358)||(43572676-43572754)
chr2 (278-388)||(35550255-35550363)
chr2 (280-381)||(31082693-31082792)
chr2 (281-381)||(15555450-15555550)
chr2 (283-387)||(34757483-34757587)
chr2 (306-389)||(1364734-1364817)
chr2 (323-389)||(1270798-1270864)
chr2 (280-374)||(40211879-40211973)
chr2 (280-389)||(21625999-21626107)
chr2 (278-389)||(26905677-26905788)
chr2 (318-389)||(30072505-30072576)
chr2 (278-356)||(39180953-39181030)
chr2 (280-386)||(16625881-16625987)
chr2 (280-347)||(39750033-39750100)
chr2 (311-389)||(36642449-36642527)
chr2 (323-376)||(725873-725926)
chr2 (311-388)||(18589985-18590062)
chr2 (323-386)||(35412298-35412361)
chr2 (280-354)||(16519220-16519294)
chr2 (280-356)||(11522296-11522372)
chr2 (280-360)||(16813511-16813591)
chr2 (280-360)||(16852790-16852870)
chr2 (278-389)||(43190636-43190746)
[»] chr6 (12 HSPs)
chr6 (280-381)||(32719480-32719581)
chr6 (281-389)||(1567157-1567265)
chr6 (306-389)||(11180256-11180338)
chr6 (278-381)||(24875037-24875140)
chr6 (280-389)||(33590424-33590533)
chr6 (281-389)||(6855511-6855618)
chr6 (322-389)||(32221920-32221987)
chr6 (280-386)||(26713738-26713844)
chr6 (280-381)||(12779392-12779491)
chr6 (306-362)||(6671421-6671477)
chr6 (305-389)||(20820627-20820710)
chr6 (280-362)||(33754929-33755012)
[»] chr5 (16 HSPs)
chr5 (280-389)||(10437861-10437970)
chr5 (280-389)||(35683570-35683679)
chr5 (280-389)||(39649445-39649555)
chr5 (280-381)||(5772824-5772925)
chr5 (312-381)||(10842952-10843021)
chr5 (311-389)||(14570137-14570215)
chr5 (280-361)||(18670908-18670989)
chr5 (306-362)||(38568496-38568552)
chr5 (280-359)||(18675839-18675918)
chr5 (280-328)||(13569264-13569312)
chr5 (280-376)||(35704585-35704681)
chr5 (309-381)||(43496964-43497035)
chr5 (338-389)||(10955787-10955838)
chr5 (306-360)||(2679992-2680046)
chr5 (280-385)||(35708854-35708959)
chr5 (323-356)||(3081459-3081492)
[»] chr3 (22 HSPs)
chr3 (278-389)||(3537081-3537192)
chr3 (280-381)||(48908978-48909079)
chr3 (306-381)||(33944744-33944819)
chr3 (306-389)||(38639490-38639573)
chr3 (280-380)||(25754206-25754306)
chr3 (306-389)||(5939878-5939961)
chr3 (306-389)||(37674237-37674320)
chr3 (280-380)||(517735-517835)
chr3 (280-389)||(49183567-49183680)
chr3 (280-380)||(51684499-51684599)
chr3 (306-389)||(53664696-53664779)
chr3 (306-381)||(44400609-44400686)
chr3 (321-389)||(33909046-33909113)
chr3 (283-381)||(27197131-27197229)
chr3 (280-381)||(53620164-53620265)
chr3 (306-389)||(50948106-50948190)
chr3 (281-348)||(27921838-27921905)
chr3 (341-384)||(45571045-45571088)
chr3 (278-361)||(50535227-50535310)
chr3 (280-362)||(16883174-16883256)
chr3 (281-378)||(31178354-31178450)
chr3 (321-378)||(38526069-38526126)
[»] chr8 (17 HSPs)
chr8 (280-381)||(23932662-23932763)
chr8 (280-385)||(79714-79820)
chr8 (280-381)||(21173962-21174063)
chr8 (280-389)||(26772739-26772847)
chr8 (281-377)||(6943542-6943638)
chr8 (282-381)||(36837578-36837677)
chr8 (287-389)||(43239552-43239654)
chr8 (280-362)||(8228409-8228491)
chr8 (281-362)||(12506314-12506396)
chr8 (280-377)||(14581856-14581953)
chr8 (280-362)||(41866240-41866322)
chr8 (278-355)||(31149797-31149874)
chr8 (280-356)||(1839949-1840025)
chr8 (280-356)||(8948503-8948579)
chr8 (306-381)||(34335942-34336018)
chr8 (280-353)||(21262708-21262781)
chr8 (320-356)||(27085264-27085300)
[»] scaffold0248 (1 HSPs)
scaffold0248 (280-381)||(300-402)
[»] scaffold0136 (1 HSPs)
scaffold0136 (280-381)||(2127-2228)
[»] scaffold0119 (2 HSPs)
scaffold0119 (323-389)||(30373-30439)
scaffold0119 (323-389)||(37039-37105)
[»] scaffold0031 (1 HSPs)
scaffold0031 (306-389)||(93603-93686)
[»] scaffold1163 (1 HSPs)
scaffold1163 (280-381)||(1933-2034)
[»] scaffold0002 (1 HSPs)
scaffold0002 (311-389)||(90972-91050)
[»] scaffold0388 (1 HSPs)
scaffold0388 (278-389)||(6938-7054)
[»] scaffold0991 (1 HSPs)
scaffold0991 (283-361)||(3130-3208)
[»] scaffold0263 (1 HSPs)
scaffold0263 (311-389)||(12346-12424)
[»] scaffold0053 (1 HSPs)
scaffold0053 (321-377)||(29161-29217)
[»] scaffold0051 (2 HSPs)
scaffold0051 (280-328)||(6916-6964)
scaffold0051 (280-328)||(7899-7947)


Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 25 - 389
Target Start/End: Complemental strand, 30199234 - 30198868
Alignment:
Q  25 tgtagttctttattccatgtcctcatttacctgttatttcctttgcctttaatccctttatcgttaccactctaacaaaacnnnnnnn--ttacttttgc 122  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  30199234 tgtagttccttattccatgtcctcatttacctgttatttcctttgcctttaatccctttatcgttaccactctaacaaaaaaaataaaaattacttttgc 30199135  T
Q  123 tttttctatggactagacttcacaagtcaatactataattctttgtttttcgatctttatcgaacattttcccataatcacattgaagataaatgaattt 222  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30199134 tttttctatgggctagacttcacaagtcaatactataattctttgtttttcgatctttatcgaacattttcccataatcacattgaagataaatgaatat 30199035  T
Q  223 tcgaagtccatgtaagtcgtccttgcatacaatatcattaaaatttctacgcttcgactttgtttgcgagtttagagaggaagggagaggaaggcttggg 322  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||| ||||| ||||      
T  30199034 tcgaagtccatgtaagtcgtccttgcgtacaatatcattaaaatttctacacttcggctttgtttgcgagtttagaggggaatggaggggaagacttgaa 30198935  T
Q  323 aaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  30198934 aaaaaaggaataagtaagtggaagaaatagaggaaaataggagaggagggctttggggggttaactt 30198868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 38137040 - 38136931
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38137040 ctttgtttgcgagtttggaggggaagggaggggaaggcttgagaaaaaaggaataagtaagtggaagaaatagaggaaaatggaagaggagggctttggg 38136941  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  38136940 gggttaactt 38136931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 28175669 - 28175561
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgggg 380  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||     
T  28175669 tttgtttgcgagtttggagaggaagggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggga 28175570  T
Q  381 ggttaactt 389  Q
    |||||||||    
T  28175569 ggttaactt 28175561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 12709040 - 12708931
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| |||  |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  12709040 ctttgtttgcgagtttggaggggattggaggggaaggcttgggaaaaaaagaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggg 12708941  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  12708940 gggttaactt 12708931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 29114440 - 29114330
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatg-aataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    |||||||||||||||| ||  ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  29114440 ctttgtttgcgagtttggaagggaagggaggggaaggcttgggaaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttgg 29114341  T
Q  379 ggggttaactt 389  Q
    |||||||||||    
T  29114340 ggggttaactt 29114330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 16318492 - 16318601
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||||| |||| || |||||||||||||||| |||||||| ||| |||||||||  |    
T  16318492 ctttgtttgcgagttttgaggggaagggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttcag 16318591  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  16318592 gggttaactt 16318601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 33500395 - 33500504
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||  ||||||||| |||||||||| ||||||| |||| || ||||||||||||||||||||||||| ||| |||||||||| |    
T  33500395 ctttgtttgcgagtttggaagggaagggaggggaaggcttgagaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggagaggagggctttgag 33500494  T
Q  380 gggttaactt 389  Q
    | ||||||||    
T  33500495 gagttaactt 33500504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 50496454 - 50496370
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    ||||||||||| || ||| ||| ||||||||||  ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  50496454 gactttgtttgtgaatttggaggggaagggagaaaaaggcgtgggaaaaaaagaataagtaagtggaagaaatagaggaaaatgg 50496370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 49668309 - 49668227
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||||||||||||||| ||||||||| ||| |||||| ||| ||||||| |||| || ||||||||||||||||| |||||||    
T  49668309 ctttgtttgcgagtttggagaggaagtgaggggaaggtttgagaaaaaaggaatgagcaagtggaagaaatagagaaaaatgg 49668227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 45823430 - 45823539
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||   |||||||| |||| ||||||||||||| || | || ||||||||||||||||||||||||| || | |||| ||| |     
T  45823430 ctttgtttgcgagtttggaagagaagggaggggaatgcttgggaaaaaaggagtgagcaagtggaagaaatagaggaaaatgggaggtaagggttttaga 45823529  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  45823530 gggttaactt 45823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 381
Target Start/End: Original strand, 55509764 - 55509864
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgggg 380  Q
    ||||||||| ||||| ||| | ||| |||||||||||| |||||||||||||| || |||||||||||||| || ||||||| ||  ||| |||||||||    
T  55509764 tttgtttgcaagtttggagggaaagagagaggaaggctcgggaaaaaatgaatgagcaagtggaagaaataaagaaaaatgggaggggagagctttgggg 55509863  T
Q  381 g 381  Q
    |    
T  55509864 g 55509864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 386
Target Start/End: Original strand, 52636636 - 52636742
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||  |||    || |||||||| || | || ||||||||||||||||| | | ||||||||||||||||||||    
T  52636636 ctttgtttgcgagtttggaggggaagggatgggagaattttggaaaaaaggactgagcaagtggaagaaatagagtacattggaagatgagggctttggg 52636735  T
Q  380 gggttaa 386  Q
    |||||||    
T  52636736 gggttaa 52636742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 41709322 - 41709242
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatg 361  Q
    ||||| |||||||||  || ||||| ||| |||||||||||||||||| |||  || ||||||||||||||||||||||||    
T  41709322 tttgtctgcgagtttgcaggggaagagaggggaaggcttgggaaaaaaggaacgagcaagtggaagaaatagaggaaaatg 41709242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 56426914 - 56426813
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||| |  ||  |||||||| ||| | ||| | |||||| |||| || |||||||||||||||||||| |||||||  ||||||||||||    
T  56426914 ctttgtttgcgagtctgaaggtgaagggaggggaggactttgaaaaaaaggaatgagcaagtggaagaaatagaggaacatggaaggggagggctttggg 56426815  T
Q  380 gg 381  Q
    ||    
T  56426814 gg 56426813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 16422795 - 16422878
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaag 365  Q
    |||||||| |||||| ||| ||||||||| |||| |||||| |||||| |||| || || ||||||||||| |||||||||||||    
T  16422795 tttgtttgtgagtttggaggggaagggaggggaaagcttggaaaaaaa-gaatgagcaactggaagaaataaaggaaaatggaag 16422878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 356
Target Start/End: Original strand, 42650518 - 42650591
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||||||||||| ||| ||||| ||| |||||| |||| ||||||||    ||||||||||||||||||||||    
T  42650518 ctttgtttgcgagtttggaggggaagcgaggggaaggtttggaaaaaaatg---gagtaagtggaagaaatagagga 42650591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 45971468 - 45971518
Alignment:
Q  311 ggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatg 361  Q
    ||||| |||||||||||| |||| || ||||||||||||||||||||||||    
T  45971468 ggaagtcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatg 45971518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 675246 - 675319
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaataga 353  Q
    |||||||||||||||| ||| |||||||| |||| ||||| |||||||| | |  ||||||| |||||||||||    
T  675246 ctttgtttgcgagtttggaggggaagggaaaggagggctttggaaaaaagggaagagtaagtagaagaaataga 675319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 3075966 - 3075890
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||||||||||||||| | ||| ||  | ||| ||||| ||||||||||  ||||||||||| ||||||||||    
T  3075966 ctttgtttgcgagtttagagggaaagtgaaggaaagacttggaaaaaaatgaaggagtaagtggaataaatagagga 3075890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 16461742 - 16461681
Alignment:
Q  301 ggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||| |||| ||||| ||||| |||||| |||| | ||||||||| ||||||||||||||||    
T  16461742 ggaaaggaggggaagacttggaaaaaaaagaatgaataagtggaaaaaatagaggaaaatgg 16461681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 378
Target Start/End: Original strand, 16535567 - 16535664
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    |||||||| |||||||||| |||  |||| ||| || ||||||||||| |||  || |||||||||||||||| || | ||| ||  |||||||||||    
T  16535567 tttgtttgggagtttagaggggagaggaggggagggtttgggaaaaaaggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 16535664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 382
Target Start/End: Original strand, 48620188 - 48620256
Alignment:
Q  313 aaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgggggg 382  Q
    ||||||||| |||||| |||  |||||||||||||||||||||| | ||||||  | |||||||||||||    
T  48620188 aaggcttggaaaaaaaggaaggagtaagtggaagaaatagaggacattggaaggag-gggctttgggggg 48620256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 51153704 - 51153660
Alignment:
Q  318 ttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    ||||||||||| |||| |||||||| |||||||||| ||||||||    
T  51153704 ttgggaaaaaaggaatgagtaagtgcaagaaatagaagaaaatgg 51153660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 51974249 - 51974285
Alignment:
Q  325 aaaatgaataagtaagtggaagaaatagaggaaaatg 361  Q
    |||| |||||||||||| |||||||||||||||||||    
T  51974249 aaaaggaataagtaagttgaagaaatagaggaaaatg 51974285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 4058345 - 4058236
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4058345 ctttgtttgcgagtttggaggggaagggaggggaagacttgggaaaaaaaaaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 4058246  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  4058245 gggttaactt 4058236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 16805773 - 16805664
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| ||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||||||||||    
T  16805773 ctttgtttgcgagtttggaggggaagggaggggaagacttgggaaaaaaggaataagtaagtggaagaaagagaggaaaatgggagaggagggctttggg 16805674  T
Q  380 gggttaactt 389  Q
    || |||||||    
T  16805673 ggtttaactt 16805664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 38505540 - 38505431
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||||||| ||  ||||||||||||    
T  38505540 ctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggg 38505441  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  38505440 gggttaactt 38505431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 15749154 - 15749046
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgggg 380  Q
    ||||||||||||||| ||| ||||||||| ||||||||| |||||||| |||| || |||||||||||||||| |||||||| ||| ||| |||||||||    
T  15749154 tttgtttgcgagtttggaggggaagggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagagctttgggg 15749055  T
Q  381 ggttaactt 389  Q
    |||||||||    
T  15749054 ggttaactt 15749046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 42253835 - 42253916
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatg 361  Q
    |||||||||||| ||| ||| ||||||||  | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42253835 ctttgtttgcgaatttggaggggaagggaaggaaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatg 42253916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 2826454 - 2826364
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatg 368  Q
    |||||||||||||||||| |||  ||| |||| |||||||||||| ||||| |||| |  ||||||||||||||||||||||||| |||||    
T  2826454 gactttgtttgcgagtttggaggagaatggaggggaaggcttggggaaaaaggaatgaacaagtggaagaaatagaggaaaatgggagatg 2826364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 362
Target Start/End: Complemental strand, 32650588 - 32650504
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||||||||||||||||| ||| ||||| |||  ||| | ||||||||||| |||| || |||||||||||||||||||||||||    
T  32650588 gactttgtttgcgagtttggaggggaagagaggagaaagtttgggaaaaaaagaatgagcaagtggaagaaatagaggaaaatgg 32650504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 278 - 389
Target Start/End: Complemental strand, 45940608 - 45940497
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttg 377  Q
    |||||||||||| ||||| ||| | || || | | |||||| |||||||||  ||| |  |||||||||||||||| |||||||| |||||||||||||     
T  45940608 gactttgtttgcaagtttggagggaaatggtgggaaaggctcgggaaaaaagaaatgaacaagtggaagaaatagaagaaaatgggagatgagggcttta 45940509  T
Q  378 gggggttaactt 389  Q
    ||||||||||||    
T  45940508 gggggttaactt 45940497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 362
Target Start/End: Original strand, 43741586 - 43741664
Alignment:
Q  284 gtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||||| ||||| ||| ||||| ||| |||||||||| ||||||| |||| || ||||| |||||||||||||||||||    
T  43741586 gtttgcaagtttggaggggaagtgaggggaaggcttgagaaaaaaggaatgagcaagtgaaagaaatagaggaaaatgg 43741664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 386
Target Start/End: Complemental strand, 6746772 - 6746669
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    ||||||||| |||||||||| ||||| ||| ||| || || |||||||| |||| || |||||||||   |||| |||||||| ||  ||||||||||||    
T  6746772 ctttgtttgtgagtttagaggggaagtgaggggagggatttggaaaaaaggaatgagcaagtggaag---tagaagaaaatgggaggggagggctttggg 6746676  T
Q  380 gggttaa 386  Q
    |||||||    
T  6746675 gggttaa 6746669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 30080847 - 30080929
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||| |||||||||||  ||  |||||||| ||||| |||| ||||||| |||  || |||||||||||||||||||||||||    
T  30080847 ctttatttgcgagtttgtaggagaagggaggggaagacttgagaaaaaaggaaggagcaagtggaagaaatagaggaaaatgg 30080929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 46442584 - 46442693
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaa-gtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    ||||| |||||||||| ||| ||||||||| |||||||| || || ||| |||  || || |||| |||||||||||||||||| ||  |||||||| ||    
T  46442584 ctttggttgcgagtttggaggggaagggaggggaaggctagg-aataaaggaacgagcaaagtgggagaaatagaggaaaatgggaggggagggcttcgg 46442682  T
Q  379 ggggttaactt 389  Q
    |||||||||||    
T  46442683 ggggttaactt 46442693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 34670072 - 34670152
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatg 361  Q
    |||||||||| |||| ||| | |||| || |||| ||||||||||||| |||  || |||| |||||||||||||||||||    
T  34670072 tttgtttgcgggtttggagggtaaggtaggggaatgcttgggaaaaaaggaacgagcaagtagaagaaatagaggaaaatg 34670152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 19791563 - 19791640
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagagga-----aggcttgggaaaaaatgaataagtaagtggaagaaataga 353  Q
    ||||||||||||||| ||| ||||||||| |||     ||| ||||||||||| |||| || ||||||||||||||||    
T  19791563 tttgtttgcgagtttggaggggaagggaggggaggggaaggtttgggaaaaaaggaatgagcaagtggaagaaataga 19791640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 38987314 - 38987347
Alignment:
Q  323 aaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||||||| |||||||||||||||||||||    
T  38987314 aaaaaatgaatacgtaagtggaagaaatagagga 38987347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 44487537 - 44487504
Alignment:
Q  271 acgcttcgactttgtttgcgagtttagagaggaa 304  Q
    ||||||||||||||||||||||||| ||||||||    
T  44487537 acgcttcgactttgtttgcgagtttggagaggaa 44487504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 34154534 - 34154425
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| |||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34154534 ctttgtttgcgagtttggaggggaagggaggagaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgaaagatgagggctttggg 34154435  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  34154434 gggttaactt 34154425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 29091962 - 29092063
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  29091962 ctttgtttgcgagtttggagaggaagggaggggaaggtttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggg 29092061  T
Q  380 gg 381  Q
    ||    
T  29092062 gg 29092063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 37649822 - 37649713
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| |||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  37649822 ctttgtttgcgagtttggaggggaatggaggagaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggg 37649723  T
Q  380 gggttaactt 389  Q
    | ||||||||    
T  37649722 gtgttaactt 37649713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 17760682 - 17760572
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttggga-aaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    ||||||||||||| || ||| ||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||| ||| |||||||    
T  17760682 ctttgtttgcgagcttggaggggaagggaggggaaggcttgggataaaaaagaataagcaagtggaagaaatagaggaaaatgggagaggagagctttgg 17760583  T
Q  379 ggggttaactt 389  Q
    |||||||||||    
T  17760582 ggggttaactt 17760572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 36269618 - 36269727
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||| ||| |||||||||||||||||| |||| || ||||||||||||||||| ||||||| ||  ||||||||||||    
T  36269618 ctttgtttgcgagtttggaggggaagtgaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggagggctttggg 36269717  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  36269718 gggttaactt 36269727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 36886745 - 36886846
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||||||  ||  ||||||||||||    
T  36886745 ctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgagaggggagggctttggg 36886844  T
Q  380 gg 381  Q
    ||    
T  36886845 gg 36886846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 382
Target Start/End: Complemental strand, 52068346 - 52068244
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||| ||||||| ||| |||| |||| |||||||||| |||||||  ||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  52068346 ctttgtttccgagtttggaggggaatggaggggaaggcttgagaaaaaagaaataagtaaatggaagaaatagaggaaaatgggagaggagggctttggg 52068247  T
Q  380 ggg 382  Q
    |||    
T  52068246 ggg 52068244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 27255084 - 27255193
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| |||||  || ||||| |||| ||||||| |||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  27255084 ctttgtttgcgagtttggaggggaagaaaggggaagacttgagaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggagaggagggctttggg 27255183  T
Q  380 gggttaactt 389  Q
     |||||||||    
T  27255184 aggttaactt 27255193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 5584406 - 5584489
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||| ||||||||| |||||||| |||| || |||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  5584406 ggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggggttaactt 5584489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 2909040 - 2909096
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2909040 ggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgg 2909096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 46001473 - 46001540
Alignment:
Q  311 ggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  46001473 ggaaggtttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggttttgg 46001540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 41817493 - 41817403
Alignment:
Q  291 agtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggg 381  Q
    ||||| ||| |||||||||  | || ||||| |||||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  41817493 agtttggaggggaagggaggaggagacttggaaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggaggactttggggg 41817403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 384
Target Start/End: Complemental strand, 38795535 - 38795431
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    ||||||||||||||||||||  ||||| |  ||||| |||| ||||||| |||| || ||||||||||||||||||| |||||  || ||||| ||||||    
T  38795535 ctttgtttgcgagtttagaggagaaggaaagggaagacttgagaaaaaaggaatgagcaagtggaagaaatagaggacaatgggtgaagagggttttggg 38795436  T
Q  380 gggtt 384  Q
    |||||    
T  38795435 gggtt 38795431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 33324550 - 33324618
Alignment:
Q  321 ggaaaaaatgaataagtaagtggaagaaatagaggaaaat-ggaagatgagggctttggggggttaactt 389  Q
    |||||||| |||| || |||| |||||||||||||||||| |||||| ||||||||||||||||||||||    
T  33324550 ggaaaaaaggaatgagcaagtagaagaaatagaggaaaatgggaaga-gagggctttggggggttaactt 33324618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 50586925 - 50586999
Alignment:
Q  282 ttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||| ||||| ||| |||||||||||||  |||| |||||||| |||  || |||||||||||||||||||    
T  50586925 ttgtttgcaagtttggaggggaagggagaggagagctttggaaaaaaggaaggagcaagtggaagaaatagagga 50586999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 356
Target Start/End: Complemental strand, 49103154 - 49103081
Alignment:
Q  283 tgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    ||||||||||||| ||| ||||||||| ||| || |||| |||||| | |  ||||||||||||||||||||||    
T  49103154 tgtttgcgagtttggaggggaagggaggggagggtttggaaaaaaagggaggagtaagtggaagaaatagagga 49103081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 4204956 - 4204900
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||| |||||||||||||||||| |||| |||| |||||||||| | ||||||||||    
T  4204956 ggaggggaaggcttgggaaaaaaggaatgagtaggtggaagaaacaaaggaaaatgg 4204900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 356
Target Start/End: Original strand, 17556543 - 17556619
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||||||||||| ||| ||||||||| ||| || |  | |||||| |||  ||||||||||||||||||||||    
T  17556543 ctttgtttgcgagtttggaggggaagggaggggagggttcagaaaaaaaggaaggagtaagtggaagaaatagagga 17556619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 28719000 - 28718921
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatg-aataagtaagtggaagaaatagagga 356  Q
    |||||||||||||||||| ||| |||| |||| ||| || || |||||||| | || ||| |||||||||||||||||||    
T  28719000 gactttgtttgcgagtttggaggggaaaggagtggagggttttggaaaaaaaggaagaagcaagtggaagaaatagagga 28718921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 31920172 - 31920220
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaa 328  Q
    |||||||||||||||| ||| |||| |||| |||||| |||||||||||    
T  31920172 ctttgtttgcgagtttggaggggaaaggaggggaaggtttgggaaaaaa 31920220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 39887091 - 39887023
Alignment:
Q  321 ggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||||||| |||| || |||||||||||||| ||| |||||  ||  |||||||||||| |||||||||    
T  39887091 ggaaaaaaagaatgagcaagtggaagaaataaagggaaatgagaggggagggctttgggtggttaactt 39887023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 50225948 - 50226024
Alignment:
Q  313 aaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||||||||||| ||  |||||| | ||| |||||||||||||||||| |||  || |  ||||||||||||||||    
T  50225948 aaggcttgggaaagaagaaataagcaggtgaaagaaatagaggaaaatgaaaggcgaagattttggggggttaactt 50226024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 26254 - 26363
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||| |||||||  || ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26254 ctttgtttacgagtttgaaggggaagggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggg 26353  T
Q  380 gggttaactt 389  Q
    ||| ||||||    
T  26354 gggataactt 26363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 37194142 - 37194251
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatg-aataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    ||||||||||||||| ||| ||||||||| ||||| |||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37194142 tttgtttgcgagtttggaggggaagggaggggaagacttgagaaaaaaaggaataagtaagtggaagaaatagaggaaaatggaagacgagggctttggg 37194241  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  37194242 gggttaactt 37194251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 11514919 - 11515028
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||||||| |||| || |||||||||||||||| |||||||| ||| ||| ||||||||    
T  11514919 ctttgtttgcgagtttggaggggaagggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagagctttggg 11515018  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  11515019 gggttaactt 11515028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 13018684 - 13018575
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||  ||||||||| |||||||||| ||||||| |||| |||||||||||||||| ||||||||||| ||| ||||||||||||    
T  13018684 ctttgtttgcgagtttggaagggaagggaggggaaggcttgagaaaaaaggaatgagtaagtggaagaaatggaggaaaatgggagaggagggctttggg 13018585  T
Q  380 gggttaactt 389  Q
    | ||||||||    
T  13018584 gagttaactt 13018575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 6655993 - 6656102
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||| ||||||||| ||| ||||||||| ||||||||  |||||||| |||| || |||||||||||||||| |||||||| ||| ||||||||||||    
T  6655993 ctttgtctgcgagtttggaggggaagggaggggaaggctaaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggg 6656092  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  6656093 gggttaactt 6656102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 386
Target Start/End: Original strand, 4003303 - 4003409
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    ||||||||| |||||| ||| ||||||||| ||| ||||| |||||||| |||| || ||||||||||||||||||||||||| ||  ||||||||||||    
T  4003303 ctttgtttgtgagtttggagtggaagggaggggagggctttggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggg 4003402  T
Q  380 gggttaa 386  Q
    |||||||    
T  4003403 gggttaa 4003409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 43572754 - 43572676
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaa 358  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  43572754 ctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaggaataggtaagtggaagaaatagaggaaa 43572676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 278 - 388
Target Start/End: Complemental strand, 35550363 - 35550255
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttg 377  Q
    |||||||||||||||||| ||| |||||| |  ||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||  ||||||||      
T  35550363 gactttgtttgcgagtttggaggggaaggaatgggaagtcttgagaaaaaaagaataaataagtggaagaaatagaggaaaatggaagtggagggctt-- 35550266  T
Q  378 gggggttaact 388  Q
    |||||||||||    
T  35550265 gggggttaact 35550255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 31082693 - 31082792
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||||  ||||||| |||| ||||||||||||| |||| || ||||||||||||||||||||||||| ||  ||||||||||||    
T  31082693 ctttgtttgcgagtttggaga--aagggaggggaacgcttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggg 31082790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 381
Target Start/End: Complemental strand, 15555550 - 15555450
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgggg 380  Q
    ||||||||||||||| ||| | ||||||| ||||| ||| |||||||| |||| || |||||||||||||||| |||||||| ||| |||||||||||||    
T  15555550 tttgtttgcgagtttggagggaaagggaggggaagacttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttgggg 15555451  T
Q  381 g 381  Q
    |    
T  15555450 g 15555450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 34757483 - 34757587
Alignment:
Q  283 tgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgggggg 382  Q
    ||||||||| ||| ||| ||||||||| |||||| ||||||||||| |||| || | ||| ||||||||||| ||||||| ||| |||||||||||||||    
T  34757483 tgtttgcgaatttggaggggaagggaggggaaggtttgggaaaaaaggaatgagcaggtgaaagaaatagagaaaaatgggagaggagggctttgggggg 34757582  T
Q  383 ttaac 387  Q
    |||||    
T  34757583 ttaac 34757587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 1364734 - 1364817
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||| ||||||||| |||||||| |||| || |||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  1364734 ggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggggggttaactt 1364817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 1270864 - 1270798
Alignment:
Q  323 aaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||||||||| || ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  1270864 aaaaaatgaatgagcaagtggaagaaatcgaggaaaatggaagaagagggttttggggggttaactt 1270798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 40211879 - 40211973
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggct 374  Q
    ||||||||| |||||| |||  |||||||  |||||| ||| ||||||| |||||| |||||||||||||||||||||||||| ||| |||||||    
T  40211879 ctttgtttgtgagtttggaggagaagggatgggaaggtttgagaaaaaaggaataattaagtggaagaaatagaggaaaatgggagaggagggct 40211973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 21625999 - 21626107
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||| ||| ||| |||| |||| |||||  |||| |||||| |||| || |||| |||||||||||||||||||||| | ||| ||||||||    
T  21625999 ctttgtttgcgaatttggaggggaatggaggggaagatttggaaaaaaaggaatgagcaagtagaagaaatagaggaaaatggaa-aggagtgctttggg 21626097  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  21626098 gggttaactt 21626107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 278 - 389
Target Start/End: Original strand, 26905677 - 26905788
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttg 377  Q
    ||||||||||| |||||| |||  |||  ||| |||||| ||||||||||| |||| || |||||||||||||| |||||||||| ||| ||||  ||||    
T  26905677 gactttgtttgtgagtttggaggagaaatgaggggaaggtttgggaaaaaaagaatgagcaagtggaagaaataaaggaaaatgggagaggaggattttg 26905776  T
Q  378 gggggttaactt 389  Q
     |||||||||||    
T  26905777 aggggttaactt 26905788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 389
Target Start/End: Complemental strand, 30072576 - 30072505
Alignment:
Q  318 ttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||||||||| |||| || ||||||||||||||||||||||||| ||  |||||||||| |||||||||||    
T  30072576 ttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttgaggggttaactt 30072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 39180953 - 39181030
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||||||||||||| ||||||||||||| || ||| || |||||||| |||  ||||||||||||||||||||||    
T  39180953 gactttgtttgcgagtttggagaggaagggag-gggaggatttggaaaaaaggaaggagtaagtggaagaaatagagga 39181030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 386
Target Start/End: Complemental strand, 16625987 - 16625881
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| ||| || || |||||||| ||   || ||||||||||||||||| | | ||| ||  ||||||||||||    
T  16625987 ctttgtttgcgagtttggaggggaagggaggggagggttttggaaaaaaggatggagcaagtggaagaaatagagtacattgggaggggagggctttggg 16625888  T
Q  380 gggttaa 386  Q
    |||||||    
T  16625887 gggttaa 16625881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 39750033 - 39750100
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaaga 347  Q
    |||| ||||||||||| ||| |||||| || |||||||||||||||||| |||| || ||||||||||    
T  39750033 ctttctttgcgagtttggaggggaaggaaggggaaggcttgggaaaaaaggaatgagcaagtggaaga 39750100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 36642527 - 36642449
Alignment:
Q  311 ggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||||||||| |||||| |||| |  |||| ||||||||| || ||||||| |||| ||||||||||| |||||||||    
T  36642527 ggaaggcttggaaaaaaaggaatgaacaagttgaagaaataaagaaaaatgggagataagggctttgggaggttaactt 36642449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 725873 - 725926
Alignment:
Q  323 aaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggcttt 376  Q
    |||||| |||||||||||||||||||||||| |||| ||||||  |||||||||    
T  725873 aaaaaaggaataagtaagtggaagaaatagaagaaattggaaggagagggcttt 725926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 18589985 - 18590062
Alignment:
Q  311 ggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaact 388  Q
    ||||||||||| |||| | |||| || || |||||||||||||||||||||| ||  ||||| ||||||| |||||||    
T  18589985 ggaaggcttggaaaaacaggaatgagcaaatggaagaaatagaggaaaatgggaggggagggttttggggtgttaact 18590062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 35412361 - 35412298
Alignment:
Q  323 aaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaa 386  Q
    |||||| |||| | ||||||||| |||||||||| | ||||| | |||||||||||||||||||    
T  35412361 aaaaaaggaatgattaagtggaaaaaatagaggacattggaaaaggagggctttggggggttaa 35412298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 16519294 - 16519220
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagag 354  Q
    |||||||||||||||| ||| ||||| ||| ||| || || |||||||| |||  || |||||||||||||||||    
T  16519294 ctttgtttgcgagtttggaggggaagagaggggagggttttggaaaaaaggaaggagcaagtggaagaaatagag 16519220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 11522372 - 11522296
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||||||||||| ||| |||| |||| ||| || || | |||||| |||  ||||| ||||||||||||||||    
T  11522372 ctttgtttgcgagtttggaggggaatggaggggagggttttgaaaaaaaggaaggagtaaatggaagaaatagagga 11522296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 16813511 - 16813591
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaat 360  Q
    |||||||||||||||| ||| |||||||||  |||||  | |||||||| |||  ||||| ||||| |||| |||||||||    
T  16813511 ctttgtttgcgagtttggaggggaagggaggagaaggtctaggaaaaaaagaacgagtaaatggaaaaaattgaggaaaat 16813591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 16852790 - 16852870
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaat 360  Q
    |||||||||||||||| ||| |||||||||  |||||  | |||||||| |||  ||||| ||||| |||| |||||||||    
T  16852790 ctttgtttgcgagtttggaggggaagggaggagaaggtctaggaaaaaaagaacgagtaaatggaaaaaattgaggaaaat 16852870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 389
Target Start/End: Complemental strand, 43190746 - 43190636
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatg-aataagtaagtggaagaaatagaggaaaatggaagatgagggcttt 376  Q
    |||||| ||||||||||| ||| | ||||||  |||| | |||| |||||| | ||| || ||||||||||||||||||||||||| ||  ||||| |||    
T  43190746 gactttatttgcgagtttggagggaaagggaatggaaagtttggaaaaaaaaggaatcag-aagtggaagaaatagaggaaaatgggaggggaggg-ttt 43190649  T
Q  377 ggggggttaactt 389  Q
    | |||||||||||    
T  43190648 gaggggttaactt 43190636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 32719581 - 32719480
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||    
T  32719581 ctttgtttgcgagtttggaggggaagggaggggaaggctagggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggaaaggagggctttggg 32719482  T
Q  380 gg 381  Q
    ||    
T  32719481 gg 32719480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 1567157 - 1567265
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgggg 380  Q
    ||||||||||||||| ||| ||||||||| ||||||||| |||||||| |||| || |||||||||||||||| |||||||| ||| ||| |||||||||    
T  1567157 tttgtttgcgagtttggaggggaagggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagagctttgggg 1567256  T
Q  381 ggttaactt 389  Q
    |||||||||    
T  1567257 ggttaactt 1567265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 11180338 - 11180256
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||| |||||||||||||||||| |||| || |||| |||||||||||||||||||| | | ||||||||||||||||||||||    
T  11180338 ggaggggaaggcttgggaaaaaaggaatgagcaagtagaagaaatagaggaaaatggga-aggagggctttggggggttaactt 11180256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 381
Target Start/End: Complemental strand, 24875140 - 24875037
Alignment:
Q  278 gactttgtttgcgagtttagagaggaa-gggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggcttt 376  Q
    |||||||||||||||||| || ||||| ||||| |||| ||||||||||||| ||||||| || ||||||||||| | |||||||| ||  |||||||||    
T  24875140 gactttgtttgcgagttt-gaaaggaaagggaggggaatgcttgggaaaaaaggaataagcaaatggaagaaatataagaaaatgggaggggagggcttt 24875042  T
Q  377 ggggg 381  Q
    |||||    
T  24875041 ggggg 24875037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 33590533 - 33590424
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| |||| |||| |||||| ||| ||| ||| |||| || ||||| || |||||||||||||||| ||  ||||  ||||||    
T  33590533 ctttgtttgcgagtttggaggggaatggagtggaaggtttgagaagaaaggaatgagcaagtgaaaaaaatagaggaaaatgggaggggaggattttggg 33590434  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  33590433 gggttaactt 33590424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 389
Target Start/End: Original strand, 6855511 - 6855618
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgggg 380  Q
    |||||||| |||||| ||  ||||||||| ||||||||||| |||||| |||| || || || || |||||||||||||||| ||   || |||||||||    
T  6855511 tttgtttgtgagtttggaagggaagggaggggaaggcttggaaaaaaa-gaatgagcaaatgaaataaatagaggaaaatgggagggaagagctttgggg 6855609  T
Q  381 ggttaactt 389  Q
    |||||||||    
T  6855610 ggttaactt 6855618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 32221920 - 32221987
Alignment:
Q  322 gaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||||| ||||||| |||||||||||||| || ||||| ||||| ||||| |||| |||||||||||    
T  32221920 gaaaaaaagaataagcaagtggaagaaataaagaaaaatagaagaggagggttttgaggggttaactt 32221987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 386
Target Start/End: Original strand, 26713738 - 26713844
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| ||| || || |||| ||| |||  || ||||||||||||||||| | | ||| ||  |||||||||| |    
T  26713738 ctttgtttgcgagtttggaggggaagggaggggagggttttggaataaaggaaggagcaagtggaagaaatagagtacattgggaggggagggctttgag 26713837  T
Q  380 gggttaa 386  Q
    |||||||    
T  26713838 gggttaa 26713844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 12779392 - 12779491
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||  |||  |||||||| |||||| |||| |||||| |||| || |||| ||| |||||||||||||||| | | ||||||||||||    
T  12779392 ctttgtttgcgagttg-gaggtgaagggaggggaaggtttggaaaaaaaggaatgagcaagtagaataaatagaggaaaatggga-aggagggctttggg 12779489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 6671421 - 6671477
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||| |||||||||||||||||   ||| || |||||||||||||||||||||||||    
T  6671421 ggaggggaaggcttgggaaaaatgaaatgagcaagtggaagaaatagaggaaaatgg 6671477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 20820710 - 20820627
Alignment:
Q  305 gggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||| ||||| |||| ||||||| |||| |  |||||||||||||| || ||||||| ||  ||||||||||||||||||||||    
T  20820710 gggaggggaagacttgcgaaaaaa-gaatgaacaagtggaagaaataaagaaaaatgggaggggagggctttggggggttaactt 20820627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 33754929 - 33755012
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaat-gaataagtaagtggaagaaatagaggaaaatgg 362  Q
    ||||| ||| |||| | ||| ||||| ||||||||| ||||||||||||  |||| || |||||||| ||||||||||||||||    
T  33754929 ctttgattgtgagtgtggaggggaagtgagaggaagacttgggaaaaaaaagaatgagcaagtggaataaatagaggaaaatgg 33755012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 10437861 - 10437970
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||| ||  |||| |||||||    
T  10437861 ctttgtttgcgagtttggaggggaagggagaggaaggcttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggaggtctttggg 10437960  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  10437961 gggttaactt 10437970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 35683679 - 35683570
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    ||||||||||||||||  || ||||||||| |||||| || |||||||| |||| || |||||||||||||||| |||||||| ||| |||||||| |||    
T  35683679 ctttgtttgcgagtttgaaggggaagggaggggaaggtttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggcttcggg 35683580  T
Q  380 gggttaactt 389  Q
    ||||||||||    
T  35683579 gggttaactt 35683570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 39649445 - 39649555
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatg-aataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    |||||||||||||||| ||| | ||||||| | |||||||||||||||| | ||| || |||||||||||||| | |||||||| ||| |||||||||||    
T  39649445 ctttgtttgcgagtttggagggcaagggagggaaaggcttgggaaaaaaaggaatgagcaagtggaagaaataaatgaaaatgggagaggagggctttgg 39649544  T
Q  379 ggggttaactt 389  Q
    |||||||||||    
T  39649545 ggggttaactt 39649555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 5772925 - 5772824
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    ||||||||  |||||| ||| ||||||||| ||||||||| |||||||| |||| || |||||||||||||||| |||||||| ||| ||||||||||||    
T  5772925 ctttgtttaagagtttggaggggaagggaggggaaggcttaggaaaaaaagaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggg 5772826  T
Q  380 gg 381  Q
    ||    
T  5772825 gg 5772824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 381
Target Start/End: Original strand, 10842952 - 10843021
Alignment:
Q  312 gaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggg 381  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  10842952 gaaggcttgagaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggggg 10843021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 14570215 - 14570137
Alignment:
Q  311 ggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||||||||||||||||| |||| |  ||||||| ||||||||||||||||| ||  ||||||||||| ||||||||||    
T  14570215 ggaaggcttgggaaaaaaggaatgaccaagtggacgaaatagaggaaaatgggaggggagggctttggagggttaactt 14570137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 18670908 - 18670989
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatg 361  Q
    ||||||||| |||||| ||| ||||||||| ||||||||| |||||||| |||| |  |||| |||||||||||||||||||    
T  18670908 ctttgtttgtgagtttggaggggaagggaggggaaggcttcggaaaaaaggaatgatcaagtcgaagaaatagaggaaaatg 18670989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 38568552 - 38568496
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||| |||||||||||||||||| |||| || ||||| |||||||||||||||||||    
T  38568552 ggaggggaaggcttgggaaaaaaggaatgagcaagtgaaagaaatagaggaaaatgg 38568496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 18675918 - 18675839
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaa 359  Q
    ||||||| | |||||| ||  |||||||||  ||||||||||||||||| |||| |  ||||||||||||||||||||||    
T  18675918 ctttgttggtgagtttggaagggaagggaggcgaaggcttgggaaaaaaggaatgaccaagtggaagaaatagaggaaaa 18675839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 13569264 - 13569312
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaa 328  Q
    |||||||||||||||| ||| ||||||||| |||| |||||||||||||    
T  13569264 ctttgtttgcgagtttggaggggaagggaggggaatgcttgggaaaaaa 13569312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 35704585 - 35704681
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggcttt 376  Q
    |||||||||| ||||| ||||||||||||| ||| || || || ||||| |||  |  ||||||||||||||||||| | ||| ||| |||||||||    
T  35704585 ctttgtttgcaagtttggagaggaagggaggggagggttttgggaaaaaggaaggaacaagtggaagaaatagaggacattgggagaggagggcttt 35704681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 381
Target Start/End: Complemental strand, 43497035 - 43496964
Alignment:
Q  309 gaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggg 381  Q
    |||| |||||| |||||||| |||| || ||||| |||||||| |||||||||| ||| ||||||||||||||    
T  43497035 gagggaggctttggaaaaaa-gaatcagcaagtgaaagaaataaaggaaaatgggagaggagggctttggggg 43496964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 10955838 - 10955787
Alignment:
Q  338 aagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||||||||||||||| |||||||||   | ||||||||||||||||||||    
T  10955838 aagtggaagaaatagagaaaaatggaaagagggggctttggggggttaactt 10955787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 2680046 - 2679992
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaat 360  Q
    |||| ||||| |||| ||||||| ||||||| |||||||||||||||| ||||||    
T  2680046 ggaggggaagacttgagaaaaaaggaataagcaagtggaagaaatagaagaaaat 2679992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 35708959 - 35708854
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatg-aataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    ||||||||| |||||| ||| ||||||||| ||| || |||| |||||| | ||  |||||||||||||||| ||||| | ||||||  | |||||||||    
T  35708959 ctttgtttgtgagtttggaggggaagggaggggagggtttggaaaaaaaaggaaggagtaagtggaagaaattgaggacattggaaggag-gggctttgg 35708861  T
Q  379 ggggtta 385  Q
    |||||||    
T  35708860 ggggtta 35708854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 3081492 - 3081459
Alignment:
Q  323 aaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||| |||||||||||||||||||||||||||    
T  3081492 aaaaaaagaataagtaagtggaagaaatagagga 3081459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 278 - 389
Target Start/End: Original strand, 3537081 - 3537192
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttg 377  Q
    |||||||||||||||||| ||| ||||||||| |||||||||  ||||||| |||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  3537081 gactttgtttgcgagtttggaggggaagggaggggaaggctttagaaaaaaggaatgagtaagtggaagaaatagaggaaaatgggaggggagggctttg 3537180  T
Q  378 gggggttaactt 389  Q
    || |||||||||    
T  3537181 ggaggttaactt 3537192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 48909079 - 48908978
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||| ||||| ||| ||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||    
T  48909079 ctttgtttgcaagtttggaggggaagggaggggaagacttggaaaaaaaagaataagtaagtggaagaaatagaggaaaatgggagaggaaggctttggg 48908980  T
Q  380 gg 381  Q
    ||    
T  48908979 gg 48908978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 33944819 - 33944744
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggg 381  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  33944819 ggaggggaaggcttgggaaaaaaggaataagtaagtggaagaaatagaggaaaatgggagaggagggctttggggg 33944744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 38639490 - 38639573
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || || ||||||||||||||||    
T  38639490 ggaggggaaggcttgggaaaaaaagaataagtaagtggaagaaatagaggaaaatgggagaggaaggttttggggggttaactt 38639573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 25754306 - 25754206
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||   |||||||| ||||| ||||| |||||| ||||||||||||| ||||||||||||| ||||| ||| ||||||||||||    
T  25754306 ctttgtttgcgagtttggatgagaagggaggggaagtcttggaaaaaaaggaataagtaagtgaaagaaatagaggataatgggagaggagggctttggg 25754207  T
Q  380 g 380  Q
    |    
T  25754206 g 25754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 5939961 - 5939878
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  5939961 ggaggggaagacttgggaaaaaaggaatgagcaagtggaagaaatagaggaaaatgggagatgaaggttttggggggttaactt 5939878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 37674320 - 37674237
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||| |||||||||||||||||| |||  || |||||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  37674320 ggaggggaaggcttgggaaaaaaggaacgagcaagtggaagaaataaaggaaaatgggagaggagggctttggggggttaactt 37674237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 517835 - 517735
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| | |||||||||  ||||| || |||| ||||||||||||||||||||||| | |||  |||||||||||    
T  517835 ctttgtttgcgagtttggaggggaagggagggaaaggcttggtgaaaaaggactaagcaagtggaagaaatagaggaaaataggagagaagggctttggg 517736  T
Q  380 g 380  Q
    |    
T  517735 g 517735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 389
Target Start/End: Original strand, 49183567 - 49183680
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaag----atgagggctt 375  Q
    ||||||||| |||||| ||| |||| |||| |||||| ||||||||||| |||| || ||||||||||||||||| ||||||| ||      ||||||||    
T  49183567 ctttgtttgtgagtttggaggggaatggaggggaaggtttgggaaaaaaggaatgagcaagtggaagaaatagagaaaaatgggaggggagggagggctt 49183666  T
Q  376 tggggggttaactt 389  Q
    ||||||||||||||    
T  49183667 tggggggttaactt 49183680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 380
Target Start/End: Original strand, 51684499 - 51684599
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||| ||||||||||| ||| ||||| ||| ||||| |||||||||||| |||| |  ||||||||||||||||||||||||  ||  ||||||||||||    
T  51684499 ctttatttgcgagtttggaggggaagagaggggaagacttgggaaaaaaggaatgaacaagtggaagaaatagaggaaaatgagaggggagggctttggg 51684598  T
Q  380 g 380  Q
    |    
T  51684599 g 51684599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 53664779 - 53664696
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||| ||||||||| |||||||| |||| || |||||||||||||||| |||||||  ||| |||| ||||| |||||||||||    
T  53664779 ggaggggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgagagaggaggactttgaggggttaactt 53664696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 44400609 - 44400686
Alignment:
Q  306 ggagaggaaggcttgggaaaaaat--gaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggg 381  Q
    |||| ||||||||||||||||||   |||| || |||||||||||||| |||||||||| ||| ||||||||||||||    
T  44400609 ggaggggaaggcttgggaaaaaaaaggaatgagcaagtggaagaaataaaggaaaatgggagaggagggctttggggg 44400686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 33909113 - 33909046
Alignment:
Q  321 ggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||||||| |||| || ||||||||||||||||||||||||| | | |||||||||||||| |||||||    
T  33909113 ggaaaaaaggaatgagcaagtggaagaaatagaggaaaatggga-aggagggctttgggggattaactt 33909046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 381
Target Start/End: Original strand, 27197131 - 27197229
Alignment:
Q  283 tgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggg 381  Q
    ||||||| | ||| ||| ||||||||| |||||   ||||||||||||||| || ||| |||| |||||||||||||||| ||  ||||| ||||||||    
T  27197131 tgtttgcaaatttggaggggaagggaggggaagatctgggaaaaaatgaatgagcaaggggaaaaaatagaggaaaatgggaggggagggttttggggg 27197229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 53620164 - 53620265
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| |||||||||  || ||||| |||||||| |||  || |||||| |||||||||||| | ||  ||  ||||||||||||    
T  53620164 ctttgtttgcgagtttggaggggaagggaggtgagggctttggaaaaaaggaaggagcaagtgggagaaatagaggacattgagagcggagggctttggg 53620263  T
Q  380 gg 381  Q
    ||    
T  53620264 gg 53620265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 389
Target Start/End: Original strand, 50948106 - 50948190
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggc-tttggggggttaactt 389  Q
    |||| |||||| || |||||||| |||| || | |||||||||||||| |||||||| ||| |||||| ||||| ||||||||||    
T  50948106 ggaggggaaggtttaggaaaaaaggaatgagcatgtggaagaaatagaagaaaatgggagaggagggcttttggagggttaactt 50948190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 27921838 - 27921905
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaa 348  Q
    ||||||||||||||| ||| |||||||||| || || |||| |||||| |||  ||||||||||||||    
T  27921838 tttgtttgcgagtttggaggggaagggagacgacggtttggaaaaaaaggaaagagtaagtggaagaa 27921905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 45571088 - 45571045
Alignment:
Q  341 tggaagaaatagaggaaaatggaagatgagggctttggggggtt 384  Q
    |||||||||||||||||||||||||  ||||||| |||||||||    
T  45571088 tggaagaaatagaggaaaatggaaggggagggctatggggggtt 45571045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 50535310 - 50535227
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatg 361  Q
    ||||||||||||||||||  || |||||||||  |||| | || ||||||| |||| || || | |||||||||||||||||||    
T  50535310 gactttgtttgcgagtttgaaggggaagggaggagaagacatgagaaaaaaggaatgagcaaatagaagaaatagaggaaaatg 50535227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 16883174 - 16883256
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    ||||| ||||||||||| || | |||||| | ||| ||||| ||||||| |||| || ||||| |||||||||| ||||||||    
T  16883174 ctttgattgcgagtttacagggaaagggaaaagaatgcttgagaaaaaaggaatgagcaagtgaaagaaatagaagaaaatgg 16883256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 378
Target Start/End: Complemental strand, 31178450 - 31178354
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    |||||||| |||||| ||| | ||||||| ||| || || | |||||||||| |||||| ||||||||||||| || | ||||||  |||||||||||    
T  31178450 tttgtttgggagtttggag-gaaagggaggggagggttttgaaaaaaatgaagaagtaaatggaagaaatagaagacattggaaggagagggctttgg 31178354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 38526069 - 38526126
Alignment:
Q  321 ggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    |||||||| ||| |||||||||||||||||||| || | ||||||  |||||||||||    
T  38526069 ggaaaaaaggaagaagtaagtggaagaaatagaagacattggaaggagagggctttgg 38526126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 23932763 - 23932662
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||  ||| ||||||||||||    
T  23932763 ctttgtttgcgagtttggaggggaagggaagggaaggcttgggaaaaaaggaataaataagtggaagaaatagaggaaaatgagagaggagggctttggg 23932664  T
Q  380 gg 381  Q
    ||    
T  23932663 gg 23932662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 385
Target Start/End: Complemental strand, 79820 - 79714
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaa-aaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||| |||| |||  || ||||||||||||||||||||||||| ||  |||||||||||    
T  79820 ctttgtttgcgagtttggaggggaagggaggggaaggcttgggaaaaaaaggaacgagcaagtggaagaaatagaggaaaatgggaggggagggctttgg 79721  T
Q  379 ggggtta 385  Q
    |||||||    
T  79720 ggggtta 79714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 21174063 - 21173962
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||| |||| |||| |||||||| |||| || |||||||||||||||| |||||||| ||| ||||||||||||    
T  21174063 ctttgtttgcgagtttggagtggaagggaggggaatgcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggg 21173964  T
Q  380 gg 381  Q
    ||    
T  21173963 gg 21173962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 26772847 - 26772739
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| | ||||||||||||||||| |||||||| |||| || |||||||||||||||| |||||||| ||| || |||||||||    
T  26772847 ctttgtttgcgagtttggagggaaagggagaggaaggcttaggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagagga-ggctttggg 26772749  T
Q  380 gggttaactt 389  Q
     |||||||||    
T  26772748 aggttaactt 26772739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 281 - 377
Target Start/End: Complemental strand, 6943638 - 6943542
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttg 377  Q
    |||||||||||||||  ||||||||||||||||||  ||||||||||| |||| || || ||||||||||||||||||||||||| ||| |||||||    
T  6943638 tttgtttgcgagtttgaagaggaagggagaggaagatttgggaaaaaaagaatgagcaattggaagaaatagaggaaaatggaaggtgatggctttg 6943542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 36837677 - 36837578
Alignment:
Q  282 ttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggg 381  Q
    ||||||| |||||| ||| ||||| ||| |||||| ||| ||||||| |||||| |||||||||||||||||||||||| | ||| ||||||||||||||    
T  36837677 ttgtttgtgagtttggaggggaagagaggggaaggtttgagaaaaaaggaataaataagtggaagaaatagaggaaaataggagaggagggctttggggg 36837578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 389
Target Start/End: Original strand, 43239552 - 43239654
Alignment:
Q  287 tgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaa 386  Q
    ||||||||||||| ||||||||| |||||||||| ||||||| |||| | |||| | ||||||||||||||||||| ||  |||||||||  ||||||||    
T  43239552 tgcgagtttagaggggaagggaggggaaggcttgtgaaaaaaggaatgaataagagaaagaaatagaggaaaatgggaggggagggctttatggggttaa 43239651  T
Q  387 ctt 389  Q
    |||    
T  43239652 ctt 43239654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 362
Target Start/End: Original strand, 8228409 - 8228491
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    |||||||||||||||| || ||||| |||| |||| ||||| ||||||| |||| || ||||||||||||||||| |||||||    
T  8228409 ctttgtttgcgagtttggaaaggaatggaggggaatgcttgagaaaaaaggaatgagcaagtggaagaaatagagaaaaatgg 8228491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 12506396 - 12506314
Alignment:
Q  281 tttgtttgcgagtttagagaggaagggagaggaaggcttgg-gaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    ||||||||||||||| ||||||||||||| ||||| |||||  ||||||||||| || || ||||| ||||||||||||||||    
T  12506396 tttgtttgcgagtttggagaggaagggaggggaagacttggaaaaaaaatgaatgagcaattggaaaaaatagaggaaaatgg 12506314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 377
Target Start/End: Complemental strand, 14581953 - 14581856
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttg 377  Q
    ||||||||||||||||  || |||| |||| |||||||||||||||||| |||| || ||  ||||||||||||||||||| |||   ||||||||||    
T  14581953 ctttgtttgcgagtttgcaggggaaaggaggggaaggcttgggaaaaaaggaatgagcaaccggaagaaatagaggaaaatagaatgggagggctttg 14581856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 362
Target Start/End: Complemental strand, 41866322 - 41866240
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatgg 362  Q
    ||||||||||||||||  || |||||| ||  |||| |||| |||||||||||| || |||||||||||||| ||||||||||    
T  41866322 ctttgtttgcgagtttgaaggggaaggtaggagaagacttgagaaaaaatgaatgagcaagtggaagaaataaaggaaaatgg 41866240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 31149797 - 31149874
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagg 355  Q
    |||||||||||||||||| ||| ||||||||| |||  | || |||||| |||||| || ||||||||||||||||||    
T  31149797 gactttgtttgcgagtttggaggggaagggagtggagtgttttggaaaacatgaatgagcaagtggaagaaatagagg 31149874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 1840025 - 1839949
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||||||||||| ||| |||||| |  | ||||||||| |||| | |||  ||||||||||||||||||||||    
T  1840025 ctttgtttgcgagtttggaggggaaggaaaggaaaggcttggaaaaataggaaggagtaagtggaagaaatagagga 1839949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 356
Target Start/End: Original strand, 8948503 - 8948579
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    |||||||||||| |||  |||||||||||| ||| |  |||| |||||| |||| | ||||||||||||||||||||    
T  8948503 ctttgtttgcgaatttgaagaggaagggaggggatgatttggaaaaaaaggaatgattaagtggaagaaatagagga 8948579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 34335942 - 34336018
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatg-aataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggg 381  Q
    |||| |||||||||| ||||||| | ||| || |||||||||||||| |||||||||| ||  ||||||||||||||    
T  34335942 ggaggggaaggcttgagaaaaaaaggaatgagcaagtggaagaaataaaggaaaatgggaggggagggctttggggg 34336018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 21262781 - 21262708
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaataga 353  Q
    |||||||||||||||| ||| |||||||| |||| ||||| |||||||| | |  |||| || |||||||||||    
T  21262781 ctttgtttgcgagtttggaggggaagggaaaggagggctttggaaaaaagggaagagtaggtagaagaaataga 21262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 356
Target Start/End: Original strand, 27085264 - 27085300
Alignment:
Q  320 gggaaaaaatgaataagtaagtggaagaaatagagga 356  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  27085264 gggaaaaaaggaatgagtaagtggaagaaatagagga 27085300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 402 - 300
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttggga-aaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttgg 378  Q
    |||||||||||||||| ||| ||||||||| |||| |||||||| ||||| ||||||| ||||||||||||||||||||||||| ||| ||| |||||||    
T  402 ctttgtttgcgagtttggaggggaagggaggggaaagcttgggataaaaaagaataagcaagtggaagaaatagaggaaaatgggagaggagagctttgg 303  T
Q  379 ggg 381  Q
    |||    
T  302 ggg 300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 2228 - 2127
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||| ||||| ||| ||||||||| |||||||||  ||||||| |||| || |||||||||||||||| |||||||| ||| ||||||||||||    
T  2228 ctttgtttgcaagtttggaggggaagggaggggaaggcttaagaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagaggagggctttggg 2129  T
Q  380 gg 381  Q
    ||    
T  2128 gg 2127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 30373 - 30439
Alignment:
Q  323 aaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||||||||| || ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  30373 aaaaaatgaatgagcaagtggaagaaatcgaggaaaatggaagaagagggttttggggggttaactt 30439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 37039 - 37105
Alignment:
Q  323 aaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    ||||||||||| || ||||||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  37039 aaaaaatgaatgagcaagtggaagaaatcgaggaaaatggaagaagaggactttggggggttaactt 37105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 93686 - 93603
Alignment:
Q  306 ggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||| ||||| |||  ||| ||| | ||||||||||||||||    
T  93686 ggaggggaaggtttgggaaaaaaggaataagtaagtggaagaaataaaggaagatgacagaggagtgttttggggggttaactt 93603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 381
Target Start/End: Original strand, 1933 - 2034
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggg 379  Q
    |||||||||||||||| ||| ||||||||  ||||| ||| | |||||| |||  || |||||||||||||||| |||||||| ||  ||||||||||||    
T  1933 ctttgtttgcgagtttggaggggaagggaagggaagactttgaaaaaaaggaaggagcaagtggaagaaatagaagaaaatgggaggggagggctttggg 2032  T
Q  380 gg 381  Q
    ||    
T  2033 gg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 91050 - 90972
Alignment:
Q  311 ggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||||||||||||||||| |||| || | ||||||||||| ||| ||||| | ||  ||||||||||||||||||||||    
T  91050 ggaaggcttgggaaaaaaagaatgagcaggtggaagaaattgagaaaaataggaggggagggctttggggggttaactt 90972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 389
Target Start/End: Original strand, 6938 - 7054
Alignment:
Q  278 gactttgtttgcgagtttagagaggaagggagaggaaggcttgg-----gaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgaggg 372  Q
    |||||||||||||||||| ||| ||||||||| ||||| |||||      |||||| |||| || |||| |||||||||||||||||||| ||  |||||    
T  6938 gactttgtttgcgagtttggaggggaagggaggggaagacttggaaaaaaaaaaaaagaatgagcaagtagaagaaatagaggaaaatgggaggggaggg 7037  T
Q  373 ctttggggggttaactt 389  Q
     |||||| |||| ||||    
T  7038 ttttgggaggtttactt 7054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 3130 - 3208
Alignment:
Q  283 tgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatg 361  Q
    ||||| ||||||| ||| ||||||||||||||||||  | |||||| |||| || |||| |||||||||||| ||||||    
T  3130 tgttttcgagtttggaggggaagggagaggaaggctgcgaaaaaaaggaatgagcaagtagaagaaatagagaaaaatg 3208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 12424 - 12346
Alignment:
Q  311 ggaaggcttgggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttggggggttaactt 389  Q
    |||||| ||||||||||| |||| || | ||||||||||| ||| || || | ||  ||||||||||||||||||||||    
T  12424 ggaaggtttgggaaaaaaagaatgagcaggtggaagaaattgagaaatataggaggggagggctttggggggttaactt 12346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 29161 - 29217
Alignment:
Q  321 ggaaaaaatgaataagtaagtggaagaaatagaggaaaatggaagatgagggctttg 377  Q
    |||||||| |||| || |||||||||||||||| |||||||| |||  |||||||||    
T  29161 ggaaaaaaggaatgagcaagtggaagaaatagaagaaaatgggagagaagggctttg 29217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 6964 - 6916
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaa 328  Q
    |||||||||||||||| ||| ||||||||| ||||| |||| |||||||    
T  6964 ctttgtttgcgagtttggaggggaagggaggggaagtcttgagaaaaaa 6916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 7947 - 7899
Alignment:
Q  280 ctttgtttgcgagtttagagaggaagggagaggaaggcttgggaaaaaa 328  Q
    |||||||||||||||| ||| ||||||||| ||||| |||| |||||||    
T  7947 ctttgtttgcgagtttggaggggaagggaggggaagtcttgagaaaaaa 7899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University