View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_low_13 (Length: 391)
Name: NF14487_low_13
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 50445277 - 50444995
Alignment:
| Q |
22 |
taggttgggcatgcaattaaaacagtcttcttcaaaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaactcccccatc |
121 |
Q |
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| T |
50445277 |
taggttgggcatgcaattaaaacagtcttcttcaaaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaactcccccatc |
50445178 |
T |
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| Q |
122 |
aagcttaattttcggaaatgccaagattttattgtcaaaacttggcatgccaaacctctttgtgatatatctttggtgattaaagccaaaattagtcatg |
221 |
Q |
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| T |
50445177 |
aagctcaattttcggaaacgccaagattttattgtcaaaacttggcatgccaaacctc--tgtgatatatctttggtgattaaagccaaaattattcatg |
50445080 |
T |
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| Q |
222 |
aaaataggatcagttgcaagaaaaacataatgcaccaaaaagtaaagtcactgaggcacgttctctcaatcagcagcaagcaggaa |
307 |
Q |
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| T |
50445079 |
aaaataggatcagttgcaagaaaaacataatgcaccaaaaagtaaagtcactgaggcacgtt-tctcaatcagcagtaagcaggaa |
50444995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 48395982 - 48395725
Alignment:
| Q |
29 |
ggcatgcaattaaaacagtcttcttcaaaactggtaagggaagaactaaaatcatgattaagtgtggtgtgtatatgcatgaactcccccatcaagctta |
128 |
Q |
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| T |
48395982 |
ggcatgcaattaaaacagtcttcttcgaaactggtaaggtaagaactgaaatcaagattaagtgtg---tgcatgtggatgaactcccccatcaagctca |
48395886 |
T |
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| Q |
129 |
attttcggaaatgccaagattttattgtcaaaacttggcatgccaaacctctttgtgatatatctttggtgatt-aaagccaaaattagtcatgaaaata |
227 |
Q |
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| T |
48395885 |
atttccgaaaatgccaagaccttattgtcagaacttggcatgccaaacctctttgtgagatatctctggtgattaaaacccaaaattagtcatgaaaat- |
48395787 |
T |
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| Q |
228 |
ggatcagttgcaagaaaaacataatgcaccaaaaagtaaagtcactgaggcacgttctctcaat |
291 |
Q |
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| T |
48395786 |
--ttcagttgcaagaaaaacataatactccagaaagtgaagccattgaggcatgttctcccaat |
48395725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 331 - 381
Target Start/End: Complemental strand, 50444996 - 50444946
Alignment:
| Q |
331 |
aattgcagtttgctacccaactgcagttagctgtcgttggggtgatgatgt |
381 |
Q |
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| T |
50444996 |
aattgcagtttactacccaactgcagttagctgtcgttggggttatgatgt |
50444946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 42841720 - 42841674
Alignment:
| Q |
299 |
aagcaggaactacacttaagtgcagcttagccaattgcagtttgcta |
345 |
Q |
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| T |
42841720 |
aagcaggaactgcacttaagtgcagctgagtcaattgcagtttgcta |
42841674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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