View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_low_15 (Length: 374)
Name: NF14487_low_15
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 34650786 - 34650470
Alignment:
| Q |
1 |
atgcatatcatatagaattgttaacaagactagagaataaagtaacataagaatcaaattgcatgcatgtcaagtttcaaggttttcttctgttgacaaa |
100 |
Q |
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| T |
34650786 |
atgcatatcatatagaattgttaacaagactagagaataaagtaacataagaatcaaattgcatgcatgtcaagtttcaaggtcttcttctgttgacaaa |
34650687 |
T |
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| Q |
101 |
gaacttattaccagttacatgttagtataataatgtccaaaaatcagaataaaaaacaagcattgttagttactatagatgcatgcacacatgataggtt |
200 |
Q |
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| T |
34650686 |
gaacttattaccagttacatgttagtataataatgtccaaaaatcagaataaaaaacaagcattgttagttactatagatgcatgcacacatgataggat |
34650587 |
T |
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| Q |
201 |
catgtttacaaaaagaggttgttgtttttccttgatattcatggtagaacgtaacaaatagatctgatctgaattcaattacaaataaggaccttttgtt |
300 |
Q |
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| T |
34650586 |
catttttacaaaaagaggttgttgtttttccctgatattcatggtagaacgtaacaaatagatctgatctgaattcaattacaaataaggaccttttgtt |
34650487 |
T |
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| Q |
301 |
gagaattttcatctaac |
317 |
Q |
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| T |
34650486 |
gagaattttcatctaac |
34650470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 355
Target Start/End: Complemental strand, 34650446 - 34650416
Alignment:
| Q |
325 |
tagagtgagatagaaagagaccttgttgtcg |
355 |
Q |
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| T |
34650446 |
tagagtgagatagaaagagaccttgttgtcg |
34650416 |
T |
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