View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_low_18 (Length: 284)
Name: NF14487_low_18
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 37458893 - 37458623
Alignment:
| Q |
1 |
ctggcctggttcttttgctgcattatgcgacgagttcaataaaattgaaaattttacctgtggcaatgactttggtctatgaaatatcgagataaaggcc |
100 |
Q |
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| T |
37458893 |
ctggcctggttcttttgctgcattatgcgacgagttcaataaaattgaaaattttacctgtggcaatgactttggtctatgaaatatcgagataaaggcc |
37458794 |
T |
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| Q |
101 |
cttctttttatcaaggtttggaatatgccttgaaagttatgtccaagttaccgaaaaatctatcatataaaagacaaataagacattaccgaataaaaac |
200 |
Q |
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| T |
37458793 |
cttctttttatcaaggtttggaatatgccttgaaagttatgtccaagttaccgaaaaatctatcatataaaagacaaataaggcattactgaataaaaac |
37458694 |
T |
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| Q |
201 |
agggtttcgctgttgagatctcatttatcatgttacatcacacataataattgatgcagacattaccttag |
271 |
Q |
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| T |
37458693 |
agggtttcgctgttgagatctcatttatcatgttacatcacacataataattgatgcagacattaccttag |
37458623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 38250742 - 38250878
Alignment:
| Q |
9 |
gttcttttgctgcattatgcgacgagttcaataaaatt-------gaaaattttacctgtggcaatgactttggtctatgaaatatcgagataaaggccc |
101 |
Q |
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| T |
38250742 |
gttcttttgctgcattctgcgatgagttcaataaaattcaaatttgaaaaatttacttgtgacgatgactttggtctataaagggtcgagaaaaaggcgc |
38250841 |
T |
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| Q |
102 |
ttcttttt-atcaaggtttggaatatgccttgaaagt |
137 |
Q |
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| T |
38250842 |
ttcttgttcatcaaggtttggaagatgccttgaaagt |
38250878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 22178608 - 22178657
Alignment:
| Q |
4 |
gcctggttcttttgctgcattatgcgacgagttcaataaaattgaaaatt |
53 |
Q |
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| T |
22178608 |
gcctggttcttttgctgcactctacgatgagttcaataaaattcaaaatt |
22178657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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