View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14487_low_2 (Length: 653)

Name: NF14487_low_2
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14487_low_2
NF14487_low_2
[»] chr5 (7 HSPs)
chr5 (5-240)||(7497998-7498229)
chr5 (380-639)||(7497556-7497816)
chr5 (294-348)||(7497851-7497905)
chr5 (204-272)||(28056382-28056450)
chr5 (563-610)||(7497500-7497547)
chr5 (204-252)||(4800521-4800570)
chr5 (204-252)||(32379949-32379997)
[»] chr2 (1 HSPs)
chr2 (205-252)||(43621968-43622015)
[»] scaffold0252 (1 HSPs)
scaffold0252 (204-246)||(8001-8043)
[»] chr4 (2 HSPs)
chr4 (249-287)||(24088521-24088559)
chr4 (204-252)||(24088584-24088632)
[»] chr8 (3 HSPs)
chr8 (204-245)||(40614217-40614258)
chr8 (204-252)||(12697733-12697781)
chr8 (204-252)||(42012610-42012658)
[»] chr7 (2 HSPs)
chr7 (204-245)||(47530318-47530359)
chr7 (192-252)||(37385253-37385313)
[»] chr3 (3 HSPs)
chr3 (187-239)||(12094422-12094475)
chr3 (204-252)||(28300668-28300716)
chr3 (204-252)||(50280107-50280155)
[»] chr1 (2 HSPs)
chr1 (191-252)||(34395939-34396000)
chr1 (204-252)||(39380839-39380887)
[»] scaffold0002 (1 HSPs)
scaffold0002 (204-252)||(440721-440769)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 7498229 - 7497998
Alignment:
Q  5 acagatccttctgtgagacttcctacatctccttcacgtatatcgattgtgctagtaccgtcttcatttgcccaactcaattttccactgcctgaaaccc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7498229 acagatccttctgtgagacttcctacatctccttcacgtatatcgattgtgctagtaccgtcttcatttgcccaactcaattttccactgcctgaaaccc 7498130  T
Q  105 cgctaagttgtatgagtataaaaattaatttgcttttgagataaagtgcaaaaaggatttcaataataaatggcagcataaattttatttataaaataca 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    |||||||||| |    
T  7498129 cgctaagttgtatgagtataaaaattaatttgcttttgagataaagtgcaaaaaggatttcaataataaatggccgcataaatt----ttataaaataga 7498034  T
Q  205 aatgatatttatacaactactctatgacaacttttg 240  Q
    ||| ||||||||||||||||||||||||||||||||    
T  7498033 aattatatttatacaactactctatgacaacttttg 7497998  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 380 - 639
Target Start/End: Complemental strand, 7497816 - 7497556
Alignment:
Q  380 gttgagatttttggttgaaaagctgtttaatatagtaga--taataaggagtggtcccttatcttaaggattttagtcctccannnnnnngttgtcttac 477  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||||       ||||||||||    
T  7497816 gttgagatttttggttgaaaagctgtttaatatagtagagataataagaagtggtcccttattataaggattttagtcctccatttttt-gttgtcttac 7497718  T
Q  478 atgaagtggtaaagactatatgaannnnnnnnnnnnnnnnnnnnnnattgcacaactgtaaggtccttaattcgaattcaggtgaaggtgtctagcctca 577  Q
    ||||||||||||||||||||||||                      |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7497717 atgaagtggtaaagactatatgaaacacacacaactcacacacacaattgcacaactgtaaggtccttaattcgaactcaggtgaaggtgtctagcctca 7497618  T
Q  578 aaatagtgatcttagactttaaggactagtcctcataaggtcctgaattcgaactcatgtga 639  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  7497617 aaatagtgatcttagactttaaggactggtccttataagatcctgaattcgaactcatgtga 7497556  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 7497905 - 7497851
Alignment:
Q  294 actaaatggttgtacaaacatcattactttttaatttttataaaaacaatgtata 348  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  7497905 actaaattgttgtacaaatatcattactttttaatttttataaaaacaatgtata 7497851  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 28056450 - 28056382
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctcgtactcacatcatgtgttta 272  Q
    ||||||||||  || ||||| | ||||| |||||||||||| || ||||||||||||||||||| ||||    
T  28056450 aaatgatattcgtaaaactattttatgataacttttgaacatctctctcgtactcacatcatgttttta 28056382  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 610
Target Start/End: Complemental strand, 7497547 - 7497500
Alignment:
Q  563 aggtgtctagcctcaaaatagtgatcttagactttaaggactagtcct 610  Q
    ||||||||||||| | ||||||||||| || |||||||||||||||||    
T  7497547 aggtgtctagcctaagaatagtgatctcaggctttaaggactagtcct 7497500  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 4800570 - 4800521
Alignment:
Q  204 aaatgatatttatacaactactctatgacaactttt-gaacaactatctc 252  Q
    |||||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  4800570 aaatgatatttatacaactactttttgacaacttttggaacaactctctc 4800521  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 32379997 - 32379949
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    ||||| ||||| |||||||| | ||||||||||||||||||||| ||||    
T  32379997 aaatggtatttgtacaactagtttatgacaacttttgaacaactttctc 32379949  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 43622015 - 43621968
Alignment:
Q  205 aatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    |||||||||| |||||||| | ||||||||||||||||||||| ||||    
T  43622015 aatgatatttgtacaactattttatgacaacttttgaacaactttctc 43621968  T

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Target: scaffold0252 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 8043 - 8001
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaac 246  Q
    |||||||||||||||||| | | ||||||||||||||||||||    
T  8043 aaatgatatttatacaaccattttatgacaacttttgaacaac 8001  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 24088559 - 24088521
Alignment:
Q  249 tctcgtactcacatcatgtgtttactctcttccttcctt 287  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  24088559 tctcatactcacatcatgtgtttactctctttcttcctt 24088521  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 24088632 - 24088584
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    ||||||||||| |||||| | | ||||||||||||||||||||| ||||    
T  24088632 aaatgatatttgtacaaccattttatgacaacttttgaacaactctctc 24088584  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 40614258 - 40614217
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaa 245  Q
    |||||||||||||||||||||| ||||| || ||||||||||    
T  40614258 aaatgatatttatacaactactttatgataatttttgaacaa 40614217  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 12697781 - 12697733
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    |||||||||||||||||||| | ||||| || |||||||||||| ||||    
T  12697781 aaatgatatttatacaactattttatgataatttttgaacaactttctc 12697733  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 42012658 - 42012610
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    |||||||||||||||||||||| ||||| |||||||  |||||| ||||    
T  42012658 aaatgatatttatacaactactttatgataactttttgacaactttctc 42012610  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 47530359 - 47530318
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaa 245  Q
    |||||||||||||||||| | | |||||||||||||||||||    
T  47530359 aaatgatatttatacaaccattttatgacaacttttgaacaa 47530318  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 37385313 - 37385253
Alignment:
Q  192 tttataaaatacaaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    ||||||||| | ||||||||||| |||||||| | | |||||||||||| |||||| ||||    
T  37385313 tttataaaagataaatgatatttgtacaactattttttgacaacttttgtacaactttctc 37385253  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 12094475 - 12094422
Alignment:
Q  187 ttttatttataaaat-acaaatgatatttatacaactactctatgacaactttt 239  Q
    ||||||||||||||| | |||||||||||||||||||| | |||||||| ||||    
T  12094475 ttttatttataaaatgagaaatgatatttatacaactattttatgacaattttt 12094422  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 28300716 - 28300668
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    ||||||||||| |||||| ||| ||||||||||||| ||||||| ||||    
T  28300716 aaatgatatttgtacaaccactttatgacaactttttaacaactttctc 28300668  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 50280155 - 50280107
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    ||||||||||| |||||| | |||||||||||||||| |||||| ||||    
T  50280155 aaatgatatttgtacaaccattctatgacaacttttgtacaactttctc 50280107  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 34396000 - 34395939
Alignment:
Q  191 atttataaaatacaaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    |||||||||  | ||||||||||| |||| ||| | ||||||||||||||||||||| ||||    
T  34396000 atttataaaggataaatgatatttgtacatctattttatgacaacttttgaacaactttctc 34395939  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 39380887 - 39380839
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    |||||||||||||||||| | | |||||||||||||  |||||||||||    
T  39380887 aaatgatatttatacaaccattttatgacaacttttttacaactatctc 39380839  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 440721 - 440769
Alignment:
Q  204 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 252  Q
    ||||||||||| |||||||||| |||||||||||||  |||||| ||||    
T  440721 aaatgatatttgtacaactactttatgacaacttttagacaactttctc 440769  T

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