View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14487_low_22 (Length: 201)

Name: NF14487_low_22
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14487_low_22
NF14487_low_22
[»] scaffold0086 (1 HSPs)
scaffold0086 (101-189)||(7582-7670)
[»] chr8 (3 HSPs)
chr8 (135-189)||(3290867-3290921)
chr8 (97-127)||(8298276-8298306)
chr8 (99-127)||(31602047-31602075)
[»] chr2 (2 HSPs)
chr2 (63-108)||(127823-127868)
chr2 (145-186)||(127869-127910)
[»] chr7 (5 HSPs)
chr7 (135-189)||(3771850-3771904)
chr7 (91-127)||(5930969-5931005)
chr7 (89-127)||(43064355-43064393)
chr7 (99-127)||(3772520-3772548)
chr7 (94-122)||(27949174-27949202)
[»] chr5 (3 HSPs)
chr5 (89-127)||(1896220-1896258)
chr5 (97-127)||(235620-235650)
chr5 (98-127)||(236226-236255)
[»] chr3 (7 HSPs)
chr3 (99-185)||(48506468-48506554)
chr3 (92-122)||(6775967-6775997)
chr3 (97-127)||(44699890-44699920)
chr3 (89-122)||(31975385-31975418)
chr3 (99-127)||(29853974-29854002)
chr3 (99-127)||(48507026-48507054)
chr3 (99-127)||(52266447-52266475)
[»] chr6 (3 HSPs)
chr6 (89-125)||(8495825-8495861)
chr6 (97-127)||(10171304-10171334)
chr6 (97-127)||(26529506-26529536)
[»] chr1 (4 HSPs)
chr1 (97-127)||(13263510-13263540)
chr1 (97-127)||(46812181-46812211)
chr1 (99-127)||(28181563-28181591)
chr1 (99-127)||(32038507-32038535)
[»] chr4 (5 HSPs)
chr4 (98-127)||(53148605-53148634)
chr4 (97-125)||(16903639-16903667)
chr4 (97-125)||(30573705-30573733)
chr4 (89-125)||(46169001-46169037)
chr4 (99-127)||(56262509-56262537)


Alignment Details
Target: scaffold0086 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 7582 - 7670
Alignment:
Q  101 tcgttgacaccaaatctcaaccgtctannnnnnnaatctaaaggctcataattgtttgttaattttattcatatggtcttttctccctt 189  Q
    ||||||||||||||||||||   ||||       ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7582 tcgttgacaccaaatctcaattatctatttttttaatctaaaggctcataattgtttgttaattttactcatatggtcttttctccctt 7670  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 3290867 - 3290921
Alignment:
Q  135 aatctaaaggctcataattgtttgttaattttattcatatggtcttttctccctt 189  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3290867 aatctaaaggctcataattgtttgttaattttactcatatggtcttttctccctt 3290921  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 8298276 - 8298306
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||||    
T  8298276 ggattcgttgacaccaaatctcaaccgtcta 8298306  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 31602047 - 31602075
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||    
T  31602047 attcgttgacaccaaatctcaaccgtcta 31602075  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 127823 - 127868
Alignment:
Q  63 ttcgaccgtgtcgttcgtatataatgatgagttaggattcgttgac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  127823 ttcgaccgtgtcgttcgtatataatgatgagttaggattcgttgac 127868  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 127869 - 127910
Alignment:
Q  145 ctcataattgtttgttaattttattcatatggtcttttctcc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  127869 ctcataattgtttgttaattttattcatatggtcttttctcc 127910  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 3771850 - 3771904
Alignment:
Q  135 aatctaaaggctcataattgtttgttaattttattcatatggtcttttctccctt 189  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  3771850 aatctaaaggctcataattatttgttaattttactcatatgatcttttctccctt 3771904  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 5931005 - 5930969
Alignment:
Q  91 gagttaggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5931005 gagttaggattcattgacaccaaatctcaaccgtcta 5930969  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 43064355 - 43064393
Alignment:
Q  89 atgagttaggattcgttgacaccaaatctcaaccgtcta 127  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  43064355 atgagttagaattcgttgacatcaaatctcaaccgtcta 43064393  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 3772548 - 3772520
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||    
T  3772548 attcgttgacaccaaatctcaaccgtcta 3772520  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 27949202 - 27949174
Alignment:
Q  94 ttaggattcgttgacaccaaatctcaacc 122  Q
    |||||||||||||||||||||||||||||    
T  27949202 ttaggattcgttgacaccaaatctcaacc 27949174  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 1896220 - 1896258
Alignment:
Q  89 atgagttaggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  1896220 atgagtcaggattcgttgacaccaaatctcaaccgtcta 1896258  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 235620 - 235650
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||||    
T  235620 ggattcgttgacaccaaatctcaaccgtcta 235650  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 236255 - 236226
Alignment:
Q  98 gattcgttgacaccaaatctcaaccgtcta 127  Q
    ||||||||||||||||||||||||||||||    
T  236255 gattcgttgacaccaaatctcaaccgtcta 236226  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 48506468 - 48506554
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtctannnnnnnaatctaaaggctcataattgtttgttaattttattcatatggtcttttctc 185  Q
    |||||||||||||||||||||||||||||       |||| |||||  |||||||||||||||| |||| |||  |||| |||||||    
T  48506468 attcgttgacaccaaatctcaaccgtctatatttttaatccaaaggtccataattgtttgttaaatttactcacctggtattttctc 48506554  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 6775997 - 6775967
Alignment:
Q  92 agttaggattcgttgacaccaaatctcaacc 122  Q
    |||||||||||||||||||||||||||||||    
T  6775997 agttaggattcgttgacaccaaatctcaacc 6775967  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 44699890 - 44699920
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||||    
T  44699890 ggattcgttgacaccaaatctcaaccgtcta 44699920  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 31975418 - 31975385
Alignment:
Q  89 atgagttaggattcgttgacaccaaatctcaacc 122  Q
    |||||||||||| |||||||||||||||||||||    
T  31975418 atgagttaggatccgttgacaccaaatctcaacc 31975385  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 29853974 - 29854002
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||    
T  29853974 attcgttgacaccaaatctcaaccgtcta 29854002  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 48507054 - 48507026
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||    
T  48507054 attcgttgacaccaaatctcaaccgtcta 48507026  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 52266475 - 52266447
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||    
T  52266475 attcgttgacaccaaatctcaaccgtcta 52266447  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 8495825 - 8495861
Alignment:
Q  89 atgagttaggattcgttgacaccaaatctcaaccgtc 125  Q
    |||||||||||||||||||||||||||| ||||||||    
T  8495825 atgagttaggattcgttgacaccaaatcccaaccgtc 8495861  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Original strand, 10171304 - 10171334
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||||    
T  10171304 ggattcgttgacaccaaatctcaaccgtcta 10171334  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 26529536 - 26529506
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||||    
T  26529536 ggattcgttgacaccaaatctcaaccgtcta 26529506  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 13263540 - 13263510
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||||    
T  13263540 ggattcgttgacaccaaatctcaaccgtcta 13263510  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 127
Target Start/End: Complemental strand, 46812211 - 46812181
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||||    
T  46812211 ggattcgttgacaccaaatctcaaccgtcta 46812181  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 28181563 - 28181591
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||    
T  28181563 attcgttgacaccaaatctcaaccgtcta 28181591  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 32038507 - 32038535
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||    
T  32038507 attcgttgacaccaaatctcaaccgtcta 32038535  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 53148634 - 53148605
Alignment:
Q  98 gattcgttgacaccaaatctcaaccgtcta 127  Q
    ||||||||||||||||||||||||||||||    
T  53148634 gattcgttgacaccaaatctcaaccgtcta 53148605  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 16903667 - 16903639
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtc 125  Q
    |||||||||||||||||||||||||||||    
T  16903667 ggattcgttgacaccaaatctcaaccgtc 16903639  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 30573733 - 30573705
Alignment:
Q  97 ggattcgttgacaccaaatctcaaccgtc 125  Q
    |||||||||||||||||||||||||||||    
T  30573733 ggattcgttgacaccaaatctcaaccgtc 30573705  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 46169037 - 46169001
Alignment:
Q  89 atgagttaggattcgttgacaccaaatctcaaccgtc 125  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  46169037 atgagttaggatccgttgacaccaaatcccaaccgtc 46169001  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 56262509 - 56262537
Alignment:
Q  99 attcgttgacaccaaatctcaaccgtcta 127  Q
    |||||||||||||||||||||||||||||    
T  56262509 attcgttgacaccaaatctcaaccgtcta 56262537  T

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