View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14487_low_3 (Length: 630)

Name: NF14487_low_3
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14487_low_3
NF14487_low_3
[»] chr8 (5 HSPs)
chr8 (16-340)||(35910938-35911259)
chr8 (401-622)||(35911330-35911550)
chr8 (267-340)||(9528908-9528981)
chr8 (267-340)||(35916268-35916341)
chr8 (268-340)||(20112825-20112897)
[»] chr4 (11 HSPs)
chr4 (16-211)||(37235722-37235919)
chr4 (433-622)||(37236679-37236872)
chr4 (477-622)||(33907489-33907632)
chr4 (267-340)||(27972657-27972730)
chr4 (267-340)||(37235943-37236016)
chr4 (267-340)||(38584093-38584166)
chr4 (267-340)||(38843710-38843783)
chr4 (267-340)||(41303623-41303696)
chr4 (267-340)||(52208007-52208080)
chr4 (501-622)||(12104664-12104781)
chr4 (397-440)||(37236073-37236116)
[»] chr7 (2 HSPs)
chr7 (267-340)||(48926626-48926699)
chr7 (267-340)||(6055066-6055139)
[»] chr5 (3 HSPs)
chr5 (267-340)||(4308724-4308797)
chr5 (267-340)||(4312555-4312628)
chr5 (267-340)||(30364370-30364443)
[»] chr3 (1 HSPs)
chr3 (267-340)||(26286776-26286849)
[»] chr1 (1 HSPs)
chr1 (267-340)||(42321476-42321549)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 35910938 - 35911259
Alignment:
Q  16 gtcataagcactaagcttaggcatcaaatcatcataatgattgtcttatcgtagcgtgtaaaagactctgaaaagcgaattttggtgaaggaaattctta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||  |||||| | |||||| ||||| |||||||||    
T  35910938 gtcataagcactaagcttaggcatcaaatcatcataatgattgccttatcgcagcgtgtgaaagact--gaaaagtggattttgatgaagcaaattctta 35911035  T
Q  116 atgtcttgaataagcacaa--tacttatggaacttgttgctgggagttccaagttgacatatttgtcaaccgacgaaccatcaagtaaggaaggattaaa 213  Q
    | |||||||||||||||||  |||||||||||||||||||||      |||| | |||||||||||||||||||||||||||||||||||||||||| ||    
T  35911036 acgtcttgaataagcacaacatacttatggaacttgttgctgtcc---ccaattggacatatttgtcaaccgacgaaccatcaagtaaggaaggattgaa 35911132  T
Q  214 agcaaaagcgtaatatttatatacattacagaagcagctaagacatatcgcatatccgttgtagtctagttggtcaggatactcggctctcacccgagag 313  Q
    ||||||||||||||| ||||||| || | ||||||||| |||| ||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  35911133 agcaaaagcgtaatacttatatagataatagaagcagcaaagatatagcacaagtccgttgtagtctagttggtcaggatactcggctctcacccgagag 35911232  T
Q  314 acccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||    
T  35911233 acccgggttcaagtcccggcaacggaa 35911259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 401 - 622
Target Start/End: Original strand, 35911330 - 35911550
Alignment:
Q  401 aggttctctttcatatttatttatgtcgcgtagtgtagcatcattctcgtcactgtcttggtctttggatagacaa---tgtcatctgtgtcgaaaacta 497  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  35911330 aggttctctttcatat--atttatgtcgcgtagtgtagcatcattctcgtcactgtcttggtctttggatagacaacaatgtcatctgtgtcgaaaacta 35911427  T
Q  498 taccaacctcttcaccttatcacactcataaaaccacttcaaattacacacnnnnnnntctcataacgacttcatcttcttcaaacaacctcgtagaaca 597  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||        |||||||||  |||||||||||||||||||||||||||||||    
T  35911428 taccaatctcttcaccttatcacactcataaaaccacttcaaattacgca--aaaaaatctcataaccgcttcatcttcttcaaacaacctcgtagaaca 35911525  T
Q  598 tgtcttctacattccactgcctgtg 622  Q
    ||||||||||||||||||| |||||    
T  35911526 tgtcttctacattccactgtctgtg 35911550  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 9528981 - 9528908
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9528981 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 9528908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 35916268 - 35916341
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916268 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 35916341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 20112825 - 20112897
Alignment:
Q  268 tccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  20112825 tccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 20112897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 2e-91; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 37235722 - 37235919
Alignment:
Q  16 gtcataagcactaagcttaggcatcaaatcatcataatgattgtcttatcgtagcgtgtaaaagactctgaaaagcgaattttggtgaaggaaattctta 115  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  37235722 gtcataagcactaagcttaggcattaaatcatcataatgattgccttatcgtagcgtgtagaagactctgaaaagcgaattttggtgaagcaaattctta 37235821  T
Q  116 atgtcttgaataagcaca--atacttatggaacttgttgctgggagttccaagttgacatatttgtcaaccgacgaaccatcaagtaaggaaggatta 211  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37235822 atgtcttgaataagcacaacatacttatggaacttgttgctgggagttccaagttgacatatttgtcaaccgacgaaccatcaagtaaggaaggatta 37235919  T

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Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 433 - 622
Target Start/End: Original strand, 37236679 - 37236872
Alignment:
Q  433 gtgtagcatcattctcgtcactgtcttggtctttggatagacaa---tgtcatctgtgtcgaaaactataccaacctcttcaccttatcacactcataaa 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37236679 gtgtagcatcattctcgtcactgtcttggtctttggatagacaacaatgtcatctgtgtcgaaaactataccaacctcttcaccttatcacactcataaa 37236778  T
Q  530 accacttcaaattacac-acnnnnnnntctcataacgacttcatcttcttcaaacaacctcgtagaacatgtcttctacattccactgcctgtg 622  Q
    ||||||||||||||||| |        ||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37236779 accacttcaaattacacaaaaaaaaaatcttataaccgcttcatcttcttcaaacaacctcgtagaacatgtcttctacattccactgtctgtg 37236872  T

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Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 477 - 622
Target Start/End: Original strand, 33907489 - 33907632
Alignment:
Q  477 tgtcatctgtgtcgaaaactataccaacctcttcaccttatcacactcataaaaccacttcaaattacacacnnnnnnntctcataacgacttcatcttc 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||  ||||||||||    
T  33907489 tgtcatctgtgtcgaaaactataccaacctcttcaccttatcacactcataaaaccacttcaaattacaca--aaaaaatctcataaccgcttcatcttc 33907586  T
Q  577 ttcaaacaacctcgtagaacatgtcttctacattccactgcctgtg 622  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  33907587 ttcaaacaacctcgtagaacatgtcttctacattccactgtctgtg 33907632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 27972730 - 27972657
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27972730 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 27972657  T

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Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 37235943 - 37236016
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37235943 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 37236016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 38584166 - 38584093
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38584166 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 38584093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 38843783 - 38843710
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  38843783 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 38843710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 41303696 - 41303623
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  41303696 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 41303623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 52208007 - 52208080
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  52208007 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 52208080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 501 - 622
Target Start/End: Original strand, 12104664 - 12104781
Alignment:
Q  501 caacctcttcaccttatcacactcataaaaccacttcaaattacacacnnnnnnntctcataacgacttcatcttcttcaaacaacctcgtagaacatgt 600  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||        |||||| ||  ||| |||||||||||||||||||||| || ||||    
T  12104664 caaccttttcaccttatcacactcataaaaccacttccaattacaca---aaaaatctcatcaccgctt-atcttcttcaaacaacctcgtacaatatgt 12104759  T
Q  601 cttctacattccactgcctgtg 622  Q
    ||||| |||||||||| |||||    
T  12104760 cttctgcattccactgtctgtg 12104781  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 37236073 - 37236116
Alignment:
Q  397 gaagaggttctctttcatatttatttatgtcgcgtagtgtagca 440  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  37236073 gaagaggttctctttcatatttatttatgacgcgtagtgtagca 37236116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 48926626 - 48926699
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48926626 atccgttgtagtctagttggttaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 48926699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 6055066 - 6055139
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  6055066 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 6055139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 4308724 - 4308797
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  4308724 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 4308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 4312555 - 4312628
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  4312555 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 4312628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 30364370 - 30364443
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  30364370 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 30364443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 26286776 - 26286849
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  26286776 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 26286849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 42321476 - 42321549
Alignment:
Q  267 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 340  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  42321476 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 42321549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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