View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_low_4 (Length: 592)
Name: NF14487_low_4
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 281 - 567
Target Start/End: Original strand, 35051564 - 35051850
Alignment:
| Q |
281 |
ggtgttgaaacaatttagcttcaatcccacttttgttctttgcacattttggaggtttatatttatgtctctttgagtggacatgtttgttactttgtga |
380 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051564 |
ggtgttgaaacaatttagcttcagtcccacttttgttctttgcacattttggaggtttatatttatgtctctttgagtggacatgtttgttactttgtga |
35051663 |
T |
|
| Q |
381 |
tgaggctcttgattgtgttatgtgctagctgcctagagtggtgttatgtatttgttatatactttagcagtacagaaacatgtcttgcaatttagagatc |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051664 |
tgaggctcttgattgtgttatgtgctagctgcctagagtggtgttatgtatttgttatatactttagcagtacagaaacatgtcttgcaatttagagatc |
35051763 |
T |
|
| Q |
481 |
atgacaccttttgataacggagggatctaagtgttgtgactatgccaaaaacaagtcatgtgtgactgtcataaataagttctctgc |
567 |
Q |
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| T |
35051764 |
atgacaccttttgataacggagggatctaagtgttgtgactatgccaaaaacaagtcctgtgtgactgtcataaataagttctctgc |
35051850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 35051302 - 35051502
Alignment:
| Q |
19 |
acaacaccatatgattgataaaccatcagaatgaggacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttgcagaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051302 |
acaacaccatatgattgataaaccatcagaatgaggacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttgcagaaac |
35051401 |
T |
|
| Q |
119 |
tatttaaatttatagtgttaagtgattaagaaactacattttacatgttaggatggcaattggaatctacagcttgtactgttattgaatgtagtagaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051402 |
tatttaaatttatagtgttaagtgattaagaaactacattttacatgttaggatggcaattggaatctacagcttgtactgttattgaatgtagtagaaa |
35051501 |
T |
|
| Q |
219 |
c |
219 |
Q |
| |
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| |
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|
| T |
35051502 |
c |
35051502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 281 - 500
Target Start/End: Complemental strand, 53324055 - 53323836
Alignment:
| Q |
281 |
ggtgttgaaacaatttagcttcaatcccacttttgttctttgcacattttggaggtttatatttatgtctctttgagtggacatgtttgttactttgtga |
380 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || | |
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| T |
53324055 |
ggtgttgaaacaatttagcttcagtgtcacttttgttctttgcacattttggaggtttatatttatgtctctttcagtggacatgtt-gttactctg--a |
53323959 |
T |
|
| Q |
381 |
tgaggctcttgattgtgttatgtgctagct----gcctagagtggtgttatgtatttgttatatactttagcagtacagaaacatgtcttgcaatttaga |
476 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53323958 |
tgaggctcttgattgtgttatgtgctagctagctgcctagagtggtgttatgtatttgttatatactttagcagtacaaaaacatgtcttgcaatttaga |
53323859 |
T |
|
| Q |
477 |
gatcatgacaccttttgataacgg |
500 |
Q |
| |
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||||| |||||| ||||||||||| |
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| T |
53323858 |
gatcacgacacc-tttgataacgg |
53323836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 53324320 - 53324127
Alignment:
| Q |
19 |
acaacaccatatgattgataaaccatcagaatgaggacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttgcagaaac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||| |
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| T |
53324320 |
acaacaccatatgattgataaaccatcataatgaggacatgaatgaaccacttctttggaagacgagagttgaagatgattgttgcagactttcagaaac |
53324221 |
T |
|
| Q |
119 |
tatttaaattta--tagtgttaagtgattaagaaactacattttacatgttaggatggcaattggaatctacagcttgtactgttattgaatgt |
210 |
Q |
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||||||||| || | ||||||| |||| | || || ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
53324220 |
tatttaaatatattttgtgttaattgatcatgacgctggattttacatattaggatggcaattggaatctacaccttgtactgttattgaatgt |
53324127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 566
Target Start/End: Complemental strand, 53323836 - 53323794
Alignment:
| Q |
524 |
gccaaaaacaagtcatgtgtgactgtcataaataagttctctg |
566 |
Q |
| |
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|||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
53323836 |
gccaaaaacaagtcctgtgtgactgtcataaatgagttctctg |
53323794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 9283742 - 9283634
Alignment:
| Q |
19 |
acaacaccatatgattgataaaccatcagaat--gag-gacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttgcaga |
115 |
Q |
| |
|
|||||| ||||||| ||||||||||||| || ||| ||||||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||| |
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| T |
9283742 |
acaacatcatatgaatgataaaccatcatcatatgagagacatgaatgaaccactgctttgggatatgagagttgaaaatgatagttgcagacttgcaac |
9283643 |
T |
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| Q |
116 |
aactattta |
124 |
Q |
| |
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||||||||| |
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| T |
9283642 |
aactattta |
9283634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 20006104 - 20006058
Alignment:
| Q |
19 |
acaacaccatatgattgataaaccatcagaatgaggacatgaatgaa |
65 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
20006104 |
acaacaccatatgattgataaaccatcataataaggacatgaatgaa |
20006058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 14124261 - 14124307
Alignment:
| Q |
19 |
acaacaccatatgattgataaaccatcagaatgaggacatgaatgaa |
65 |
Q |
| |
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|||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
14124261 |
acaacaccatatgattgataaaccatcataataaggacatgaatgaa |
14124307 |
T |
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