View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_low_5 (Length: 574)
Name: NF14487_low_5
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 11 - 555
Target Start/End: Original strand, 7498215 - 7498757
Alignment:
| Q |
11 |
cacagaaggatctgttttctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacattt |
110 |
Q |
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| T |
7498215 |
cacagaaggatctgttttctatatacacaacaacttggatgaccaaaggaagaaactaagaatttatgcaatgtttaccaatactgatgatagcacattt |
7498314 |
T |
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| Q |
111 |
gtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtttgaacaaaaattgcaggatccatcaa |
210 |
Q |
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| T |
7498315 |
gtaagcttcttgcacttgtattattttcttaaactgaagtttcaaagccttgtttgtttgcaattgtttatgtt--aacaaaaattgcaggatccatcaa |
7498412 |
T |
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| Q |
211 |
ttggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaa |
310 |
Q |
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| T |
7498413 |
ttggtgcttactcaagaatcaatgaactagtcaaaggctttgataagaaaatcatccaagcagcttttaaggtatataatatgttcattcacaatgtgaa |
7498512 |
T |
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| Q |
311 |
acaataaatgtatagttggttccattttgagccaaaattgttgagtgattttgacatgtttggatattctcgagtaaaattaaatttattttgttctaaa |
410 |
Q |
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| T |
7498513 |
acaatcaatgtatagttggttccattttgaggcaaaattgttgagtgattttgacatgtttggatattctcgagtaaaattaaatttattttgttctaaa |
7498612 |
T |
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| Q |
411 |
ctttcaatttcttttgaaggtgcctgaggatttgattgaggcaatcacaaacaagactgagacaccacctatagtgcatgcagtttcagaaaagaaacat |
510 |
Q |
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| T |
7498613 |
ctttcaatttcttttgaaggtgccggaggatttgattgaggcaatcacaaacaagactgagacaccacctatagtgcatgcagtttcagaaaagaaacat |
7498712 |
T |
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| Q |
511 |
agcactgtcttggaattggaggcttcatttcttaaatactttaca |
555 |
Q |
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| T |
7498713 |
agcactgtcttggaattggaggcttcatttcttaaatactttaca |
7498757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 24338549 - 24338586
Alignment:
| Q |
356 |
tgattttgacatgtttggatattctcgagtaaaattaa |
393 |
Q |
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| T |
24338549 |
tgattttgacatgtttggatgttctcgagtaaaattaa |
24338586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 391
Target Start/End: Original strand, 2171738 - 2171770
Alignment:
| Q |
359 |
ttttgacatgtttggatattctcgagtaaaatt |
391 |
Q |
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| T |
2171738 |
ttttgacatgtttggatgttctcgagtaaaatt |
2171770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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