View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_low_6 (Length: 501)
Name: NF14487_low_6
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 48 - 492
Target Start/End: Original strand, 9719921 - 9720373
Alignment:
| Q |
48 |
gtaaaattgatttttatcttttaagatattaaactgaattatataattattgttaaagataaaaatgagacttaaacatgtatcatcaaaatatatcttc |
147 |
Q |
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| T |
9719921 |
gtaaaattgatttttatctttaaagatattaaactcaattatataattattgtaaaagataaaaatgagacttaaacatgaatcatcaaaatctatcttc |
9720020 |
T |
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| Q |
148 |
aacgtcaacaatgaattggtctaattggtaacaaacttgagtctcttaagcatgtggtcagaaattcgatttttgactctgccttatnnnnnnntttgat |
247 |
Q |
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| T |
9720021 |
aacgtcaacaatggattggtctaattggtaagagacttgagtctcttaagcatgcagtcagaaattcgatttttgactccggcttataattttttttgat |
9720120 |
T |
|
| Q |
248 |
tgggagggtagaaatatattcgtgattccaaatatgcacttatgacatatttgatatcacgattggttgattgaaattatggtggcaccatgattttata |
347 |
Q |
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| T |
9720121 |
tgggagggtagaaatatattcgtgattccaaatatgcacttatgacatatttggtatcacgattggttgattgaaattatggtgtcaccgtgattttata |
9720220 |
T |
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| Q |
348 |
gaagcttcaaagtatatcttttgcaaattta--------catcgtcattttgttaaactcatcccaaattcaaacaagcatttaatatatttggtagcta |
439 |
Q |
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| T |
9720221 |
gaagcttcaaagtatatcttttgtaaatttacggtgactcatcgtcattttgttaaactcatcccaaattcaaacaagcatttaatatatttggtagcta |
9720320 |
T |
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| Q |
440 |
aaatgaaacaagcatcaagtaaatgtgctcaacacacttcatactagaattat |
492 |
Q |
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| T |
9720321 |
aaatgaaacaaacatcaagtaaatgtgctcagcacacttcatactagaattat |
9720373 |
T |
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