View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14487_low_8 (Length: 415)

Name: NF14487_low_8
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14487_low_8
NF14487_low_8
[»] chr8 (3 HSPs)
chr8 (44-304)||(11151876-11152139)
chr8 (369-411)||(11152204-11152246)
chr8 (108-180)||(10260986-10261058)
[»] chr1 (3 HSPs)
chr1 (44-180)||(27308562-27308698)
chr1 (105-180)||(10550791-10550866)
chr1 (112-180)||(27292234-27292302)
[»] chr3 (2 HSPs)
chr3 (108-180)||(23780291-23780363)
chr3 (109-180)||(4858103-4858174)
[»] chr4 (3 HSPs)
chr4 (86-180)||(53591462-53591556)
chr4 (116-180)||(9734256-9734320)
chr4 (113-185)||(22210215-22210287)
[»] chr5 (3 HSPs)
chr5 (113-180)||(28076671-28076738)
chr5 (105-177)||(1954380-1954452)
chr5 (115-179)||(25640394-25640458)
[»] chr2 (2 HSPs)
chr2 (129-180)||(40412488-40412539)
chr2 (233-291)||(18419300-18419358)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 44 - 304
Target Start/End: Original strand, 11151876 - 11152139
Alignment:
Q  44 aaaccacaaaatcaaaacccaacgggttatacaacaatatgctacaaagtggtaaaatccaaacaacaactctaaacaattactgccacggacaatccaa 143  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||     
T  11151876 aaaccacaaaatcaaaacccaacgggtgatacaacaatatggtacaaagtggtaaaatacaaacaacaactccaaacaatcactgccacggacaatccag 11151975  T
Q  144 cgaactcacgtatgagagcgaaaccgaattgcaaaaatgacgatccatat--------acatgcatacaagaaaattatnnnnnnnnnnntaataataaa 235  Q
    ||||| |||||||||| ||||||||||||||||||||||| |||||||||        |||||||||||||||||||||            |||||||||    
T  11151976 cgaacccacgtatgagcgcgaaaccgaattgcaaaaatgatgatccatattgatttgaacatgcatacaagaaaattataaaaaaa-----aataataaa 11152070  T
Q  236 ttaaaccatatgaaacaacgcatgtgaaacattgattaaacaatgtagtacaaatattgataggttata 304  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11152071 ttaaaccatatgaaacaacgcatgtgaaacattgattaagcaatgtagtacaaatattgataggttata 11152139  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 11152204 - 11152246
Alignment:
Q  369 tactggatagccctagcacctctactaccccataccatgccta 411  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  11152204 tactgggtagccctagcacctctactaccccataccatgccta 11152246  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 10260986 - 10261058
Alignment:
Q  108 aacaactctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    |||||| ||||||||| ||| |||| || |||||| |||||  ||||||||| | ||||||||||||||||||    
T  10260986 aacaaccctaaacaatcactaccacagataatccagcgaacatacgtatgagcgtgaaaccgaattgcaaaaa 10261058  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 27308562 - 27308698
Alignment:
Q  44 aaaccacaaaatcaaaacccaacgggttatacaacaatatgctacaaagtggtaaaatccaaacaacaactctaaacaattactgccacggacaatccaa 143  Q
    ||||||||||||||| ||||||||||| |||||||||||   |||| |||| || ||| ||||||||||||||||||||| ||| ||||| ||||||||     
T  27308562 aaaccacaaaatcaatacccaacgggtgatacaacaatacagtacagagtgatataatacaaacaacaactctaaacaatcactaccacgaacaatccag 27308661  T
Q  144 cgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
     |||| ||| |||||| | ||||| ||||||||||||    
T  27308662 tgaacccacatatgagcgtgaaacggaattgcaaaaa 27308698  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 10550866 - 10550791
Alignment:
Q  105 aacaacaactctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    |||||||||  |||||||| | || ||||||||||||| | ||| ||||||||||  |||||||||||||||||||    
T  10550866 aacaacaaccttaaacaatcattgtcacggacaatccagcaaacccacgtatgagcacgaaaccgaattgcaaaaa 10550791  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 27292234 - 27292302
Alignment:
Q  112 actctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    |||||||||||| ||| |||||||||| ||| | ||| ||||| || |  |||||||||||||||||||    
T  27292234 actctaaacaatcactaccacggacaaaccagcaaacccacgtgtgggcacgaaaccgaattgcaaaaa 27292302  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 23780363 - 23780291
Alignment:
Q  108 aacaactctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    |||||||||||||||| |||||||||||||||||| |||| ||| | |||||  |||||||||||||||||||    
T  23780363 aacaactctaaacaatcactgccacggacaatccagcgaattcatgcatgagcacgaaaccgaattgcaaaaa 23780291  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 4858103 - 4858174
Alignment:
Q  109 acaactctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    ||||| ||||||||| ||| | ||||||||| || ||||| |||||||||| || |||||||||||||||||    
T  4858103 acaaccctaaacaatcactactacggacaattcagcgaacccacgtatgagcgccaaaccgaattgcaaaaa 4858174  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 53591462 - 53591556
Alignment:
Q  86 tacaaagtggtaaaatccaaacaacaactctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    ||||||||||||  |  |||||||||||||||||| || |||||||| ||||||| | ||||| |||||||||| | |||| |||||||||||||    
T  53591462 tacaaagtggtattaaacaaacaacaactctaaacgatcactgccacagacaatctatcgaacccacgtatgagcgtgaaatcgaattgcaaaaa 53591556  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 9734320 - 9734256
Alignment:
Q  116 taaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    |||||||| ||| |||||||||||| | ||||| ||||| || |  |||||||||||||||||||    
T  9734320 taaacaatcactaccacggacaatctagcgaacccacgtgtgggcacgaaaccgaattgcaaaaa 9734256  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 22210287 - 22210215
Alignment:
Q  113 ctctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaatgacg 185  Q
    ||||||||| | |||  ||||||||||||| ||||  ||||| |||| |||||||||||||| ||||| ||||    
T  22210287 ctctaaacattcactaacacggacaatccagcgaatccacgtgtgagcgcgaaaccgaattgtaaaaaagacg 22210215  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 28076671 - 28076738
Alignment:
Q  113 ctctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    ||||||||||| ||| |||||||||||||||||||| ||||| |  || |||||||||||||||||||    
T  28076671 ctctaaacaatcactaccacggacaatccaacgaacccacgtgtaggaacgaaaccgaattgcaaaaa 28076738  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 1954452 - 1954380
Alignment:
Q  105 aacaacaactctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaa 177  Q
    ||||||||| ||||||||| |||||||| |||||| || ||||  |||||||||  |||||||||||||||||    
T  1954452 aacaacaaccctaaacaatcactgccacagacaattcagcgaatccacgtatgaacgcgaaaccgaattgcaa 1954380  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 25640394 - 25640458
Alignment:
Q  115 ctaaacaattactgccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaa 179  Q
    ||||||||| ||| |||||||||||||| ||||| ||||| || | |||||||||||||||||||    
T  25640394 ctaaacaatcactaccacggacaatccagcgaacccacgtgtgggcgcgaaaccgaattgcaaaa 25640458  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 40412488 - 40412539
Alignment:
Q  129 ccacggacaatccaacgaactcacgtatgagagcgaaaccgaattgcaaaaa 180  Q
    |||| |||||| || |||||||||||||||| |||||||| |||||||||||    
T  40412488 ccactgacaattcagcgaactcacgtatgagcgcgaaaccaaattgcaaaaa 40412539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 18419358 - 18419300
Alignment:
Q  233 aaattaaaccatatgaaacaacgcatgtgaaacattgattaaacaatgtagtacaaata 291  Q
    |||||||||||||||||||||  || ||||||| | |||||||||| ||||||| ||||    
T  18419358 aaattaaaccatatgaaacaagacaagtgaaacttagattaaacaaagtagtaccaata 18419300  T

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