View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14487_low_9 (Length: 412)
Name: NF14487_low_9
Description: NF14487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14487_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 31262878 - 31263160
Alignment:
| Q |
18 |
gtttgattgttcttgtgctattccaattgttatgatatatatggtgctacaattattatccttggttaacaatagaaagatctaaggaaaatacaatagc |
117 |
Q |
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| T |
31262878 |
gtttgattgttcttgtgctattccaattgttatgatatatatggtgctacaattattatccttggttaacaatagaaagatctaaggaaaatacaatagc |
31262977 |
T |
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| Q |
118 |
aagacatagtgattacttttattgtttattcattacaattttgtgttgttttcttgttgcgctttctcttctgtcttttttcaagtttcagactattact |
217 |
Q |
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| T |
31262978 |
aagacatagtgattacttttattgtttattcattacaattttgtgttgttttcttgttgcgctttctcttctgtcatttttcaagtttcagactattact |
31263077 |
T |
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| Q |
218 |
tcccacttccatttatttggcttctgcttgatatttgttttcaagtttcagagtattatcctttgttaatattccttcttata |
300 |
Q |
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| T |
31263078 |
tcccacttccatttatttggcttctgcttgatatttgttttcaagtttcagagtattatcctttgttaatattccttcttata |
31263160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 31263165 - 31263214
Alignment:
| Q |
354 |
tcagagtttcctacagattc----attgtgtctctacaacatgtttgtct |
399 |
Q |
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| T |
31263165 |
tcagagtttcctacagattcattcattgtgtctctacaacatgtctgtct |
31263214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 43692806 - 43692701
Alignment:
| Q |
82 |
gttaacaatagaaagatctaaggaaaatacaatagcaagacatagtgattacttttattgtttatt-cattacaattttgtgttgttttcttgttgcgct |
180 |
Q |
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| T |
43692806 |
gttaacaatagaaagctctaaagaaaattcaacggccagatatagctactactttcattggttatttcattacaattttgtgtggttttcttgttgtgct |
43692707 |
T |
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| Q |
181 |
ttctct |
186 |
Q |
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|||||| |
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| T |
43692706 |
ttctct |
43692701 |
T |
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