View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14488_high_14 (Length: 260)
Name: NF14488_high_14
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_high_14 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 26279526 - 26279765
Alignment:
| Q |
19 |
gttgaatgaatgagtcactctgtttattcgatgttgcagactataataatatggttgctaagtatcagttgtattatatcttgaaaacacatgttaaccc |
118 |
Q |
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| T |
26279526 |
gttgaatgaatgagtcactctgtttattcgatgttgcagactataataatatggttgctaagtatcagttgtattatatcttgaaaacacatgttaaccc |
26279625 |
T |
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| Q |
119 |
tttgcagtgtggaattgatgcattgcctggcatcacacatacctatctgcctgcttagagacagtgagttcagagttcctattaatatttattgttttat |
218 |
Q |
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| T |
26279626 |
tttgcagtgtggaattgatgcattgcctggcat--cacatacctatctgcctgctnagagacagtgagttcagagttcctattaatatttattgttttat |
26279723 |
T |
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| Q |
219 |
tcgatatgatgacatggaaattacttaataatgggttaattt |
260 |
Q |
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| T |
26279724 |
tcgatatgatgacatggaaattacttaataatgggttaattt |
26279765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 32590637 - 32590477
Alignment:
| Q |
61 |
ataataatatggttgctaagtatcagttgtattatatcttgaaaacacatgttaa-----------ccctttgcagtgtggaattgatgcattgcctggc |
149 |
Q |
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| T |
32590637 |
ataataagatggttactaagtatcagttttattatatcttgaaaacacattttaagtatctgttatccttttgcagcgtggaattgatgcattgcctggc |
32590538 |
T |
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| Q |
150 |
atcacacatacctatctgcctgcttagagacagtgagttcagagttcctattaatatttattg |
212 |
Q |
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| T |
32590537 |
atgaca--tacctatctgcctgcttagagacggtgagtttagagctcctattaatatttattg |
32590477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 32591004 - 32590958
Alignment:
| Q |
18 |
agttgaatgaatgagtcactctgtttattcgatgttgcagactataa |
64 |
Q |
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| T |
32591004 |
agttgaatgaatgagtcgctctgtttattcattgttgcagactataa |
32590958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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