View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14488_high_17 (Length: 245)
Name: NF14488_high_17
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_high_17 |
 | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0133 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 16871586 - 16871801
Alignment:
| Q |
19 |
caatgtctgtttgagaccattttctttagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatattttccccaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16871586 |
caatgtctgtttgagaccattttctttagagtttcatcaataaaatcgttgttattcagtgaatttatcaatttgtagtagcaaaggtattttccccaac |
16871685 |
T |
|
| Q |
119 |
acgtacgccagcaggtttgtacataattctgcactaaccatctcaacttctgtactatgtattatactaatattgattctccaatttacacatctataaa |
218 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16871686 |
gcgtacacctgcaggtttgtacataattctgcactaaccatctcaacttatgtactatgtattatactaatattgattctccaatttacacatctataaa |
16871785 |
T |
|
| Q |
219 |
aactaatattcttcga |
234 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
16871786 |
aactaatatttttcga |
16871801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 16654684 - 16654596
Alignment:
| Q |
22 |
tgtctgtttgagaccattttctttagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatattt |
110 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16654684 |
tgtccgtttgagaccaatttctttagagtttcatcaataaaatcattgttattcagtgaacttatcaatttgtagtagcaaagatattt |
16654596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 167
Target Start/End: Original strand, 16770149 - 16770293
Alignment:
| Q |
26 |
tgtttgagaccattttctttagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatattttccccaacacgtacg |
125 |
Q |
| |
|
||||||| || | |||| || ||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||| | | || |||||| |
|
|
| T |
16770149 |
tgtttgatacaactttcgtttgagtttcatcaataaaatcgttgttattcggtgaatttatcaatttctactagcaaagatatttttctctacgcgtacg |
16770248 |
T |
|
| Q |
126 |
ccagcaggt---ttgtacataattctgcactaaccatctcaactt |
167 |
Q |
| |
|
| ||||||| |||| ||| |||||||||||| ||||||||||| |
|
|
| T |
16770249 |
caagcaggtttgttgtgcatgattctgcactaagcatctcaactt |
16770293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 16784124 - 16784048
Alignment:
| Q |
105 |
atattttccccaacacgtacgccagcaggtttgtacataattctgcactaaccatctcaacttctgtactatgtatt |
181 |
Q |
| |
|
||||||||||| || | ||||| | ||||||||||||| |||||||| ||||| |||||| || | ||||||||||| |
|
|
| T |
16784124 |
atattttcccccacgcctacgcaaacaggtttgtacatgattctgcaataaccgtctcaatttttatactatgtatt |
16784048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 4852 - 4924
Alignment:
| Q |
39 |
tttctttagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatatttt |
111 |
Q |
| |
|
||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4852 |
tttcttttgagtttcatcaataaaatcgttattattcagtgaatttatcaatttgtaccagcaaagatatttt |
4924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 15281 - 15169
Alignment:
| Q |
24 |
tctgtttgagaccattttctttagagtttcatcaataaaatcattgttattcagtgaatttatcaatttgtagtagcaaagatattttccccaacacgta |
123 |
Q |
| |
|
||||||||| || | ||||||| ||||||| | ||||||| |||||||| | ||||||||||||||| | || |||||||||||||||| || |||| |
|
|
| T |
15281 |
tctgtttgatacaactttcttttgagtttccttgataaaattgttgttattaa-tgaatttatcaatttccactaccaaagatattttcccc-acgcgta |
15184 |
T |
|
| Q |
124 |
cgccagcaggtttgt |
138 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
15183 |
cggaagcaggtttgt |
15169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University