View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14488_high_9 (Length: 370)
Name: NF14488_high_9
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 14740272 - 14739936
Alignment:
| Q |
19 |
cgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctgagtgtgtatttgagctattgagtgcacttaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14740272 |
cgatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctgagtgtctatttgagctattgagtgcacttaa |
14740173 |
T |
|
| Q |
119 |
aggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaatgatgcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740172 |
aggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaatgatgcc |
14740073 |
T |
|
| Q |
219 |
tattgacattgtgcctttatttttatgcnnnnnnnaatcattgcttatttctgtgtatcacacaacaactgatattggtttgcttcctccacaagtctct |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740072 |
tattgacattgtgcctttatttttatgctttttttaatcattgcttatttctgtgtatcacaaaacaactgatattggtttgcttcctccacaagtctct |
14739973 |
T |
|
| Q |
319 |
ttacttttcagcggatactctccatctccttcctttg |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14739972 |
ttacttttcagcggatactctccatctccttcctttg |
14739936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 17585932 - 17586276
Alignment:
| Q |
20 |
gatctccatagttgatgcaaatattggtcttgagtttgactatccacaaagtgaacaatatcgtgctgagtgtgtatttgagctattgagtgcacttaaa |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17585932 |
gatctccattgttgatgcaaatattggtcttgagtttgactatccacaaagcgaacaatatgctgctcagtgtgtatttgagctattgagtgcacttaaa |
17586031 |
T |
|
| Q |
120 |
ggtgtcaagtctctcactatgacaagtgatacttttcaggtatgtttgttggttttctcgtcatttttcattttctttagtatatttagaaatgatgcct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
17586032 |
ggtgtcaagtctctcactatgacaagtgatacttttcaggtatctttgtttgttttctcgtcattttt-attttctttagtatatttacaagtgatgcct |
17586130 |
T |
|
| Q |
220 |
attgacattg-tgcctttatttttatg----cnnnnnnnaatcattgctta--tttctgtgtatcacacaacaa---ctgatattggtttgcttcctcca |
309 |
Q |
| |
|
|||||||||| ||||||| |||| || |||| ||||||| ||||| ||||| |||||| || ||| ||||||||||||||||| |
|
|
| T |
17586131 |
attgacattgttgccttttgttttgtgttttttttaattaatcgttgcttatttttctatgtatgacacaataatcgtcgatcttggtttgcttcctcca |
17586230 |
T |
|
| Q |
310 |
caagtctctttacttttcagcggatactctccatctccttcctttg |
355 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17586231 |
ttagtctctttacttttcggcggatactctccatctccttcctttg |
17586276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University