View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14488_low_1 (Length: 808)
Name: NF14488_low_1
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 41653027 - 41653381
Alignment:
| Q |
19 |
aataccaatcctaacaaatcccatgaggttacttcaccaccttctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctactt |
118 |
Q |
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| T |
41653027 |
aataccaatcctaacaaatcccatgaggttacttcaccaccttctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctactt |
41653126 |
T |
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| Q |
119 |
cttgggacaaccaggtcagtttctcatgttagttgtatcttttctgtttcttgcattcatcattcatcattatttcttcttaacaggttctgtgttggga |
218 |
Q |
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| T |
41653127 |
cttgggacaaccaggtcagtttctcattctagttgtatcttttctgtttcttgcattcatcattcatcattatttcttcttaacaggttctgtgttggga |
41653226 |
T |
|
| Q |
219 |
ggtttcacagaatggaaatactcttagtagtactcccaaagcttctatttcatatgatcaacctgtaagtacgtgctattaatacatgcatgcatgcttt |
318 |
Q |
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| T |
41653227 |
ggtttcaaagaatggaaatactcttagtagtactcccaaagcttctatttctcatgatcaacctgtaagtacgtactattaatgcatgcatgcatgcttt |
41653326 |
T |
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| Q |
319 |
tctataatcacaaagtaattcaaatgtatctacattgttgttattgttgtacttaat |
375 |
Q |
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| T |
41653327 |
tctataatcac-aagtaattc-aatgtatctacattgttgttattgttgtacttaat |
41653381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 408 - 797
Target Start/End: Original strand, 41653385 - 41653779
Alignment:
| Q |
408 |
atgtggcattggttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttt |
507 |
Q |
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| T |
41653385 |
atgtggcattggttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaagttgtgacaagcaggtcaagatgtggccacttt |
41653484 |
T |
|
| Q |
508 |
tatctggagggcaaccgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctggga |
607 |
Q |
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| T |
41653485 |
tatctggagggcaaccgacgactgttgccgtgcatgatggtcccatcaaagagattgcatggataccagagatgaatgttttggccacaggaagctggga |
41653584 |
T |
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| Q |
608 |
caaaaccattaagtatgcatattcattctttttatt---------------cgtccaaagagtcttgggtcatttcacaaattattttgtgtttattagg |
692 |
Q |
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| T |
41653585 |
caaaaccattaagcatgcatattcattcttttcattcagttaccgtacgtacgtctaaagagtattgggtc----------ttattttatgtttgttagg |
41653674 |
T |
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| Q |
693 |
tattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggttgtaggaactg |
792 |
Q |
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| T |
41653675 |
tattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggttgtaggaactg |
41653774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 8e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 419 - 644
Target Start/End: Complemental strand, 28819847 - 28819622
Alignment:
| Q |
419 |
gttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttttatctggaggg |
518 |
Q |
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|||| ||||||||||||| |||||||| ||||||||||| || || ||| | ||||||||||| ||||||| ||||||||||| ||||| ||||||||| |
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| T |
28819847 |
gttgaaggttttgtgctcagcttggaaagatgatggaacgacagtgttttctggaggttgtgataagcaggctaagatgtggccgcttttgtctggaggg |
28819748 |
T |
|
| Q |
519 |
caaccgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctgggacaaaaccatta |
618 |
Q |
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|||||| ||||||||| ||||||||| |||| | |||||||||||||||||||| ||||||| | |||| ||||| ||||||| ||||||||| | | |
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| T |
28819747 |
caaccggtgactgttgctatgcatgatgctcccattaaagagattgcatggataccggagatgagtcttttagccactggaagcttggacaaaactgtaa |
28819648 |
T |
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| Q |
619 |
agtatgcatattcattctttttattc |
644 |
Q |
| |
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|||||||| || ||||||||||||| |
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| T |
28819647 |
agtatgcaattttattctttttattc |
28819622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 28820172 - 28820102
Alignment:
| Q |
64 |
gattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggt |
134 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||| |
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| T |
28820172 |
gattctatttccagtctttctttcagtcctaaagccaatttcctcgtcgctacttcctgggacaaccaggt |
28820102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 688 - 792
Target Start/End: Complemental strand, 28818183 - 28818079
Alignment:
| Q |
688 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggttgtagg |
787 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||| ||||||||||||| || | ||||||| |||||||||||||| |||||||| || |
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| T |
28818183 |
ttaggtattgggatactaggcaatccaacccagtgcatactcaacaactccctgatcgatgttatacaatgtcagtgagacatcctctgatggttgtggg |
28818084 |
T |
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| Q |
788 |
aactg |
792 |
Q |
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||||| |
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| T |
28818083 |
aactg |
28818079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 423 - 610
Target Start/End: Complemental strand, 1464337 - 1464150
Alignment:
| Q |
423 |
taggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttttatctggagggcaac |
522 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| || | || || ||||||||||| || || |||||||| || || |||||||| |||| |
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| T |
1464337 |
taggttttgtgctctgcttggaaggatgatggcacaactgtcttctctggtggatgtgacaagcaagttaaaatgtggcctctgttgtctggaggacaac |
1464238 |
T |
|
| Q |
523 |
cgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctgggacaa |
610 |
Q |
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| | ||||| ||| |||| |||| || ||||||| ||||| ||||| || |||||||| |||| |||||||||||||||||||| |
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| T |
1464237 |
caattactgtagccatgcacgatgcacctatcaaagatattgcttggattcccgagatgaaccttttagccacaggaagctgggacaa |
1464150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 781
Target Start/End: Complemental strand, 1463665 - 1463572
Alignment:
| Q |
688 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgctgtacaatggatgtgagacatcctctcatggt |
781 |
Q |
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| T |
1463665 |
ttaggtattgggatacaaggcagccaaatccagtgcacacacaacaactcccagagcgctgctatgcaatgacagtgaaacatcctctgatggt |
1463572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 1466350 - 1466278
Alignment:
| Q |
62 |
ctgattctgtttccagtctttctttcagtcccaaagccaatttcctcattgctacttcttgggacaaccaggt |
134 |
Q |
| |
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||||||||||||||||||| ||||||||||||| |||| || || |||||||||||||||| || ||||| |
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| T |
1466350 |
ctgattctgtttccagtctcaatttcagtcccaaatccaacttacttgttgctacttcttgggataatcaggt |
1466278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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