View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14488_low_10 (Length: 363)
Name: NF14488_low_10
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_low_10 |
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| [»] scaffold0627 (2 HSPs) |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: scaffold0627 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 122 - 348
Target Start/End: Complemental strand, 2253 - 2027
Alignment:
| Q |
122 |
ttcgatctagttcggactgtggggttgtaggtggttgaatgagccttttagtgttggtcatgtcctctaaagtcttcaagagatgttgtgtgtttctata |
221 |
Q |
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|||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
2253 |
ttcgatctagttcgaactgtgggattgtaggtagttgagtgagccttttagtgttggtcatgtcctctgaagtcttcaagagatgttttgtgtttctata |
2154 |
T |
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| Q |
222 |
caccactcgaaccttgttagtatgtttcattattaaaacattgtgctctttaagcataaatgcgtaaatcttgatctcatagctgataagtcaagtcgat |
321 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2153 |
caccactcgaaccttgttagtatgtttcattattgaaacattgtgctctttaagcataaatgcgtaaatcttgatttcatagctgataagtcaagtcgat |
2054 |
T |
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| Q |
322 |
tccaagagatagcaatatctagaattt |
348 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
2053 |
tccatgagatagcaatatctagaattt |
2027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 2482 - 2361
Alignment:
| Q |
1 |
ttgttaaaaataaat-atgagcaccgaatttatattagtggctatgcaggatataaatcgttgatttaagaaccgtaactcttgattggatttagaattt |
99 |
Q |
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| T |
2482 |
ttgttaaaaataaattatgagcaccgaatttatattagtggctatgcaggatataaatcgttgatataagaaccgtaactcttgattggatttagaattt |
2383 |
T |
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| Q |
100 |
gaaaacaataccttatctctac |
121 |
Q |
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| T |
2382 |
gaaaacaacaccttatctctac |
2361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 122 - 348
Target Start/End: Complemental strand, 6965 - 6739
Alignment:
| Q |
122 |
ttcgatctagttcggactgtggggttgtaggtggttgaatgagccttttagtgttggtcatgtcctctaaagtcttcaagagatgttgtgtgtttctata |
221 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| | |||||||||| |
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| T |
6965 |
ttcgatgtagttcggactgtggggttgtaggtagttgagtgagccttttagtgctggtcatgtcctcggaagtcttcatgagatgttttttgtttctata |
6866 |
T |
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| Q |
222 |
caccactcgaaccttgttagtatgtttcattattaaaacattgtgctctttaagcataaatgcgtaaatcttgatctcatagctgataagtcaagtcgat |
321 |
Q |
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| T |
6865 |
caccactcgaaccttgttagtatgtttcattattgaaacattgcgctctttaagcataaatgcgtaaatcttgatctcatagctgataagtcaagtcgat |
6766 |
T |
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| Q |
322 |
tccaagagatagcaatatctagaattt |
348 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6765 |
tccaagagatagcaatatctagaattt |
6739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 122 - 348
Target Start/End: Complemental strand, 14377 - 14151
Alignment:
| Q |
122 |
ttcgatctagttcggactgtggggttgtaggtggttgaatgagccttttagtgttggtcatgtcctctaaagtcttcaagagatgttgtgtgtttctata |
221 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||| |||||||| | |||||||||| |
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| T |
14377 |
ttcgatgtagttcggactgtggggttgtaggtagttgagtgagctttttagtgctggtcatgtcctcggaagtcttcatgagatgttttttgtttctata |
14278 |
T |
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| Q |
222 |
caccactcgaaccttgttagtatgtttcattattaaaacattgtgctctttaagcataaatgcgtaaatcttgatctcatagctgataagtcaagtcgat |
321 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14277 |
caccactcgaaccttgttagtatgtttcattattgaaacattgcgctctttaagcataaatgcgtaaatcttgatctcatagctgataagtcaagttgat |
14178 |
T |
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| Q |
322 |
tccaagagatagcaatatctagaattt |
348 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14177 |
tccaagagatagcaatatctagaattt |
14151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 26262131 - 26262046
Alignment:
| Q |
169 |
ttagtgttggtcatgtcctctaaagtcttcaagagatgttgtgtgtttctatacaccactcgaaccttgttagtatgtttcattat |
254 |
Q |
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|||||| ||||||||||||| |||| |||||||||||| ||||| ||| | || | ||||||||||||||| | ||||||| |||| |
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| T |
26262131 |
ttagtgctggtcatgtcctccaaagccttcaagagatggtgtgtatttttgtagaacactcgaaccttgtttgaatgtttccttat |
26262046 |
T |
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