View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14488_low_11 (Length: 325)
Name: NF14488_low_11
Description: NF14488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14488_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 3331862 - 3332163
Alignment:
| Q |
8 |
gagatgaagatgttgccaggtaggactctctaatcctatctgctttttaataaatttttaccctatgatggaccattaaatagtagtcctagattagtat |
107 |
Q |
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| T |
3331862 |
gagataaagatgttgccaggtaggactctctaatcctatctgctttttcattaatttttaccctatgatggaccattaaatagtagtcctagattagtat |
3331961 |
T |
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| Q |
108 |
aaataggtatgtagtatttctctttgtccatcaagtaaaactttggataatatgacaagtttctacacattggctttgatagtgttgtttttacatgtga |
207 |
Q |
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| T |
3331962 |
aaataggtatgtagtatttctctttgtccatcaagtaaaactttggataatatgacaagtttctacacattggctttgatagtgttgtttttacatgtga |
3332061 |
T |
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| Q |
208 |
atcctattgtttcttctaaagataggaaattaagctatggtgataatgatgatcttgtgactaacttacctggccagcctcctgtttatttccagcacta |
307 |
Q |
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| T |
3332062 |
atcctattgtttcttctaaagataggaaattaagctatggtgataatgatgatcttgtgactaacttacctggccagcctcctgtttatttccagcacta |
3332161 |
T |
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| Q |
308 |
tg |
309 |
Q |
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|| |
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| T |
3332162 |
tg |
3332163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 3338349 - 3338421
Alignment:
| Q |
166 |
gtttctacacattggctttgatagtgttgtttttacatgtgaatcctattgtttcttctaaagataggaaatt |
238 |
Q |
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||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||| ||||| |||||| |
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| T |
3338349 |
gtttctacacattggctttgatagtattgtttttatgtatgaatactattgtttcttctagagataagaaatt |
3338421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 3338446 - 3338489
Alignment:
| Q |
245 |
tggtgataatgatgatcttgtgactaacttacctggccagcctc |
288 |
Q |
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| T |
3338446 |
tggtgataagggtgatcttgtgactaacttaccaggccagcctc |
3338489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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